MGE detailed information
MGE type: Conjugative plasmid MGE length: 98268 bp
Accession: NZ_CP076044 Location: 1..98268 Organism: Escherichia coli strain Stbl4 Replicon: plasmid pF
Accession: NZ_CP076044 Location: 1..98268 Organism: Escherichia coli strain Stbl4 Replicon: plasmid pF
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ITN70_RS21280 (66) | 66..1228 | + | 1163 | WP_085947771.1 | IS3 family transposase IS3 | Transposase |
| ITN70_RS21285 (1259) | 1259..1426 | + | 168 | Protein_1 | ProQ/FINO family protein | - |
| ITN70_RS21290 (1561) | 1561..1749 | + | 189 | WP_001345829.1 | hypothetical protein | - |
| ITN70_RS21295 (1947) | 1947..2033 | + | 87 | Protein_3 | endonuclease | - |
| ITN70_RS21300 (2214) | 2214..2525 | - | 312 | WP_000802277.1 | hypothetical protein | - |
| - (2821) | 2821..2882 | - | 62 | NuclAT_1 | - | - |
| - (2821) | 2821..2882 | - | 62 | NuclAT_1 | - | - |
| - (2821) | 2821..2882 | - | 62 | NuclAT_1 | - | - |
| - (2821) | 2821..2882 | - | 62 | NuclAT_1 | - | - |
| ITN70_RS21305 (2926) | 2926..3075 | + | 150 | WP_001312851.1 | Hok/Gef family protein | - |
| ITN70_RS21310 (3359) | 3359..3616 | + | 258 | WP_000083834.1 | replication regulatory protein RepA | - |
| ITN70_RS21315 (3850) | 3850..3924 | + | 75 | WP_001442103.1 | RepA leader peptide Tap | - |
| ITN70_RS21320 (4303) | 4303..6399 | - | 2097 | WP_000422420.1 | hypothetical protein | - |
| ITN70_RS21325 (6415) | 6415..6966 | - | 552 | WP_001235704.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| ITN70_RS21330 (7130) | 7130..10138 | + | 3009 | WP_001143750.1 | Tn3 family transposase ISEc63 | Transposase |
| ITN70_RS21335 (10729) | 10729..11790 | - | 1062 | WP_001092154.1 | EAL domain-containing protein | - |
| ITN70_RS21340 (11900) | 11900..12313 | - | 414 | WP_001351580.1 | hypothetical protein | - |
| ITN70_RS21345 (12477) | 12477..12872 | - | 396 | WP_000491615.1 | polymer-forming cytoskeletal protein | - |
| ITN70_RS21350 (13047) | 13047..13460 | - | 414 | WP_000483319.1 | hypothetical protein | - |
| ITN70_RS21355 (14063) | 14063..14251 | - | 189 | WP_000131420.1 | hypothetical protein | - |
| ITN70_RS21360 (14926) | 14926..15060 | + | 135 | Protein_16 | IS3 family transposase | - |
| ITN70_RS21365 (15158) | 15158..16320 | + | 1163 | WP_085955200.1 | IS3 family transposase ISEc17 | Transposase |
| ITN70_RS21370 (16376) | 16376..17662 | + | 1287 | Protein_18 | IS66 family transposase | - |
| ITN70_RS21380 (18993) | 18993..19142 | + | 150 | Protein_20 | IS66 family transposase IS679 | Transposase |
| ITN70_RS21385 (19203) | 19203..19556 | + | 354 | Protein_21 | IS3 family transposase | - |
| ITN70_RS21390 (20096) | 20096..20788 | - | 693 | WP_000286435.1 | hypothetical protein | - |
| ITN70_RS21860 (21541) | 21541..26850 | - | 5310 | WP_040078930.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| ITN70_RS22015 (27486) | 27486..31247 | - | 3762 | WP_285896510.1 | Outer membrane protein IcsA autotransporter | VF |
| ITN70_RS21405 (31431) | 31431..32378 | + | 948 | WP_001193612.1 | Outer membrane protease OmpP | VF |
| ITN70_RS21410 (32471) | 32471..33970 | + | 1500 | WP_010892530.1 | alpha/beta hydrolase | - |
| ITN70_RS21870 (34472) | 34472..34606 | + | 135 | Protein_27 | serine/threonine protein kinase | - |
| ITN70_RS21420 (34727) | 34727..35467 | + | 741 | WP_001066941.1 | tyrosine-type recombinase/integrase | - |
| ITN70_RS21425 (35752) | 35752..36729 | - | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| ITN70_RS21430 (37569) | 37569..38210 | - | 642 | WP_000990665.1 | hypothetical protein | - |
| ITN70_RS21435 (40325) | 40325..40615 | + | 291 | WP_000538310.1 | hypothetical protein | - |
| ITN70_RS21440 (40605) | 40605..41504 | + | 900 | WP_000963206.1 | nucleotide-binding protein | - |
| ITN70_RS21445 (41554) | 41554..43779 | - | 2226 | WP_000698737.1 | P-loop NTPase fold protein | - |
| ITN70_RS21450 (43781) | 43781..44869 | - | 1089 | WP_000952217.1 | transcriptional repressor PifC | - |
| ITN70_RS21455 (45449) | 45449..45667 | + | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| ITN70_RS21460 (45669) | 45669..45974 | + | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| ITN70_RS21465 (45975) | 45975..46781 | + | 807 | WP_000016982.1 | site-specific integrase | - |
| ITN70_RS21470 (47555) | 47555..48310 | + | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| ITN70_RS21475 (48898) | 48898..50064 | + | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| ITN70_RS21480 (50064) | 50064..51035 | + | 972 | WP_000817031.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| ITN70_RS21485 (51988) | 51988..52889 | + | 902 | Protein_41 | DUF1281 domain-containing protein | - |
| ITN70_RS21490 (52893) | 52893..53198 | + | 306 | WP_010892536.1 | hypothetical protein | - |
| ITN70_RS21495 (53275) | 53275..53958 | + | 684 | WP_000085939.1 | DNA methylase | - |
| ITN70_RS21500 (53959) | 53959..54180 | + | 222 | WP_001104904.1 | hypothetical protein | - |
| ITN70_RS21505 (54074) | 54074..54628 | + | 555 | WP_001358893.1 | DUF1380 family protein | - |
| ITN70_RS21510 (54674) | 54674..55450 | + | 777 | WP_001005032.1 | hypothetical protein | - |
| ITN70_RS21515 (55864) | 55864..56289 | + | 426 | WP_001198920.1 | antirestriction protein | - |
| ITN70_RS21520 (56336) | 56336..56758 | + | 423 | WP_000271685.1 | DUF1380 family protein | - |
| ITN70_RS21525 (56755) | 56755..56946 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| ITN70_RS21530 (57752) | 57752..58291 | + | 540 | WP_000290801.1 | single-stranded DNA-binding protein | - |
| ITN70_RS21535 (58348) | 58348..58581 | + | 234 | WP_000005990.1 | DUF905 family protein | - |
| ITN70_RS21540 (58647) | 58647..60605 | + | 1959 | WP_000117173.1 | ParB/RepB/Spo0J family partition protein | - |
| ITN70_RS21545 (60660) | 60660..61094 | + | 435 | WP_010892539.1 | conjugation system SOS inhibitor PsiB | - |
| ITN70_RS21550 (61091) | 61091..61853 | + | 763 | Protein_54 | plasmid SOS inhibition protein A | - |
| - (61822) | 61822..62020 | + | 199 | NuclAT_0 | - | Antitoxin Detail |
| - (61822) | 61822..62020 | + | 199 | NuclAT_0 | - | Antitoxin Detail |
| - (61822) | 61822..62020 | + | 199 | NuclAT_0 | - | Antitoxin Detail |
| - (61822) | 61822..62020 | + | 199 | NuclAT_0 | - | Antitoxin Detail |
| ITN70_RS21875 (62027) | 62027..62176 | + | 150 | Protein_55 | DUF5431 family protein | - |
| ITN70_RS21555 (62118) | 62118..62243 | + | 126 | WP_096937776.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| ITN70_RS21560 (62544) | 62544..62841 | - | 298 | Protein_57 | hypothetical protein | - |
| ITN70_RS21570 (63141) | 63141..63428 | + | 288 | WP_000107542.1 | hypothetical protein | - |
| ITN70_RS21575 (63547) | 63547..64368 | + | 822 | WP_001234417.1 | DUF932 domain-containing protein | - |
| ITN70_RS21580 (64665) | 64665..65267 | - | 603 | WP_000243701.1 | hypothetical protein | VF |
| ITN70_RS21585 (65588) | 65588..65971 | + | 384 | WP_001151527.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| ITN70_RS21590 (66158) | 66158..66847 | + | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| ITN70_RS21595 (66940) | 66940..67341 | + | 402 | WP_001369361.1 | conjugal transfer relaxosome DNA-bindin protein TraY | - |
| ITN70_RS21600 (67374) | 67374..67739 | + | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| ITN70_RS21605 (67754) | 67754..68065 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| ITN70_RS21610 (68087) | 68087..68653 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| ITN70_RS21615 (68640) | 68640..69368 | + | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| ITN70_RS21620 (69368) | 69368..70795 | + | 1428 | WP_000146685.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| ITN70_RS21625 (70785) | 70785..71375 | + | 591 | WP_000002792.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| ITN70_RS21630 (71362) | 71362..71559 | + | 198 | WP_001443030.1 | conjugal transfer protein TrbD | - |
| ITN70_RS21635 (71571) | 71571..71822 | + | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| ITN70_RS21640 (71819) | 71819..72334 | + | 516 | WP_010892541.1 | type IV conjugative transfer system lipoprotein TraV | - |
| ITN70_RS21645 (72469) | 72469..72690 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| ITN70_RS21650 (72850) | 72850..75477 | + | 2628 | WP_001064243.1 | type IV secretion system protein TraC | - |
| ITN70_RS21655 (75474) | 75474..75860 | + | 387 | WP_000099690.1 | type-F conjugative transfer system protein TrbI | - |
| ITN70_RS21660 (75857) | 75857..76489 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| ITN70_RS21665 (76486) | 76486..77478 | + | 993 | WP_000830185.1 | conjugal transfer pilus assembly protein TraU | - |
| ITN70_RS21670 (77487) | 77487..78125 | + | 639 | WP_000777688.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| ITN70_RS21675 (78122) | 78122..79930 | + | 1809 | WP_000821835.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| ITN70_RS21680 (79957) | 79957..80214 | + | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| ITN70_RS21685 (80207) | 80207..80950 | + | 744 | WP_001030367.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| ITN70_RS21690 (80966) | 80966..81313 | + | 348 | WP_001287913.1 | conjugal transfer protein TrbA | - |
| ITN70_RS21695 (81315) | 81315..81629 | - | 315 | WP_000415566.1 | protein ArtA | - |
| ITN70_RS21700 (81710) | 81710..81994 | + | 285 | WP_000624109.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| ITN70_RS21705 (81981) | 81981..82526 | + | 546 | WP_000059850.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| ITN70_RS21710 (82456) | 82456..82797 | + | 342 | WP_001443031.1 | P-type conjugative transfer protein TrbJ | - |
| ITN70_RS21715 (82784) | 82784..83164 | + | 381 | WP_001366201.1 | F-type conjugal transfer protein TrbF | - |
| ITN70_RS21720 (83164) | 83164..84537 | + | 1374 | WP_021553026.1 | conjugal transfer pilus assembly protein TraH | - |
| ITN70_RS21725 (84534) | 84534..87350 | + | 2817 | WP_001007055.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| ITN70_RS21730 (87383) | 87383..87904 | + | 522 | WP_000632670.1 | conjugal transfer entry exclusion protein TraS | - |
| ITN70_RS21735 (87929) | 87929..88660 | + | 732 | WP_000850422.1 | conjugal transfer complement resistance protein TraT | - |
| ITN70_RS21740 (88913) | 88913..91066 | + | 2154 | WP_000009350.1 | type IV conjugative transfer system coupling protein TraD | - |
| ITN70_RS21745 (91075) | 91075..91473 | - | 399 | WP_000911324.1 | type II toxin-antitoxin system VapC family toxin | - |
| ITN70_RS21750 (91473) | 91473..91700 | - | 228 | WP_000450532.1 | toxin-antitoxin system antitoxin VapB | - |
| ITN70_RS21755 (91782) | 91782..97052 | + | 5271 | WP_000987005.1 | Multifunctional conjugation protein TraI | Relaxase |
| ITN70_RS21760 (97072) | 97072..97818 | + | 747 | WP_000205776.1 | conjugal transfer pilus acetylase TraX | - |
| ITN70_RS21765 (97873) | 97873..98268 | + | 396 | WP_038430666.1 | fertility inhibition protein FinO | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 | Conjugative plasmid | TA6145, TA6369, TA20275 | NC_002483 | 1..99159 | 0 |