MGE detailed information
MGE type: Prophage MGE length: 29494 bp
Accession: NZ_CP076043 Location: 1160875..1190368 Organism: Escherichia coli strain Stbl4 Replicon: chromosome
Accession: NZ_CP076043 Location: 1160875..1190368 Organism: Escherichia coli strain Stbl4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ITN70_RS05665 (1156250) | 1156250..1156864 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| ITN70_RS05670 (1156907) | 1156907..1157761 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| ITN70_RS05675 (1157763) | 1157763..1158380 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| ITN70_RS05680 (1158391) | 1158391..1160814 | - | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| ITN70_RS05685 (1160875) | 1160875..1163301 | - | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| ITN70_RS05690 (1163500) | 1163500..1163805 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| ITN70_RS05695 (1163913) | 1163913..1164623 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| ITN70_RS05700 (1164626) | 1164626..1165186 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| ITN70_RS05705 (1165221) | 1165221..1165562 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| ITN70_RS05710 (1165697) | 1165697..1166023 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| ITN70_RS05715 (1166229) | 1166229..1167443 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| ITN70_RS05720 (1167455) | 1167455..1168474 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| ITN70_RS05725 (1168662) | 1168662..1169819 | - | 1158 | Protein_1116 | hypothetical protein ; Integrase | Integrase |
| ITN70_RS05730 (1169833) | 1169833..1170528 | - | 696 | Protein_1117 | IS3 family transposase IS2 | Transposase |
| ITN70_RS05735 (1170525) | 1170525..1171292 | - | 768 | Protein_1118 | exonuclease | - |
| ITN70_RS05740 (1171385) | 1171385..1171576 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| ITN70_RS05745 (1171573) | 1171573..1171761 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| ITN70_RS05750 (1172329) | 1172329..1172547 | - | 219 | WP_001171942.1 | protein YdfC | - |
| ITN70_RS21900 (1172577) | 1172577..1172705 | - | 129 | WP_000344964.1 | protein YdfB | - |
| ITN70_RS05755 (1172707) | 1172707..1172862 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| ITN70_RS05760 (1173029) | 1173029..1173436 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| ITN70_RS05765 (1173520) | 1173520..1173750 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| ITN70_RS05770 (1173734) | 1173734..1174012 | + | 279 | Protein_1126 | protein YdfX | - |
| ITN70_RS05775 (1174047) | 1174047..1174196 | + | 150 | WP_011443592.1 | protein YdfW | - |
| ITN70_RS05780 (1174633) | 1174633..1174965 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| ITN70_RS05785 (1175168) | 1175168..1175473 | - | 306 | WP_001326990.1 | protein YdfV | - |
| ITN70_RS05790 (1175498) | 1175498..1175737 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| ITN70_RS05795 (1175737) | 1175737..1176024 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| ITN70_RS05800 (1176096) | 1176096..1176251 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| ITN70_RS05805 (1176468) | 1176468..1176719 | + | 252 | WP_000980994.1 | protein Rem | - |
| ITN70_RS05810 (1176786) | 1176786..1177064 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| ITN70_RS05815 (1177066) | 1177066..1178115 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| ITN70_RS05820 (1178129) | 1178129..1178881 | + | 753 | WP_001047135.1 | antitermination protein | - |
| ITN70_RS05825 (1179159) | 1179159..1179248 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| ITN70_RS05830 (1179303) | 1179303..1179515 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| ITN70_RS05835 (1179816) | 1179816..1180031 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| ITN70_RS05840 (1180395) | 1180395..1180565 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| ITN70_RS05845 (1180785) | 1180785..1181000 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| ITN70_RS05850 (1181005) | 1181005..1181316 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| ITN70_RS05855 (1181313) | 1181313..1181846 | + | 534 | WP_001092971.1 | lysozyme | - |
| ITN70_RS05860 (1181843) | 1181843..1182340 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| ITN70_RS05865 (1182703) | 1182703..1182915 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| ITN70_RS05870 (1182926) | 1182926..1183114 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| ITN70_RS05875 (1183117) | 1183117..1183182 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| ITN70_RS05885 (1183588) | 1183588..1183761 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| ITN70_RS05890 (1183913) | 1183913..1184323 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| ITN70_RS05895 (1184381) | 1184381..1184614 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| ITN70_RS05900 (1185003) | 1185003..1185572 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| ITN70_RS05905 (1185523) | 1185523..1186485 | + | 963 | WP_001027733.1 | phage tail protein | - |
| ITN70_RS05910 (1186485) | 1186485..1187060 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| ITN70_RS05915 (1187158) | 1187158..1187748 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| ITN70_RS05920 (1188065) | 1188065..1188298 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| ITN70_RS05925 (1188367) | 1188367..1188480 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| ITN70_RS05930 (1189001) | 1189001..1190368 | + | 1368 | Protein_1157 | MHS family MFS transporter | - |
| ITN70_RS05935 (1190457) | 1190457..1191917 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| ITN70_RS05940 (1191952) | 1191952..1192155 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| ITN70_RS05945 (1192332) | 1192332..1193018 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| ITN70_RS05950 (1193107) | 1193107..1193853 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.01 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.008 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.004 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.004 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.007 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.004 |