MGE detailed information
MGE type: Prophage MGE length: 33462 bp
Accession: NZ_CP072054 Location: 1519531..1552992 Organism: Escherichia coli strain K1508 Replicon: chromosome
Accession: NZ_CP072054 Location: 1519531..1552992 Organism: Escherichia coli strain K1508 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5N95_RS07320 (1516046) | 1516046..1516792 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| J5N95_RS07325 (1516881) | 1516881..1517567 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| J5N95_RS07330 (1517744) | 1517744..1517947 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| J5N95_RS07335 (1517982) | 1517982..1519442 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| J5N95_RS07340 (1519531) | 1519531..1520898 | - | 1368 | Protein_1446 | MHS family MFS transporter | - |
| J5N95_RS07345 (1521419) | 1521419..1521532 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| J5N95_RS07350 (1521601) | 1521601..1521834 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| J5N95_RS07355 (1522151) | 1522151..1522741 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| J5N95_RS07360 (1522839) | 1522839..1523414 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| J5N95_RS07365 (1523414) | 1523414..1524376 | - | 963 | WP_001027733.1 | phage tail protein | - |
| J5N95_RS07370 (1524327) | 1524327..1524896 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| J5N95_RS07375 (1525285) | 1525285..1525518 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| J5N95_RS07380 (1525576) | 1525576..1525986 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| J5N95_RS07385 (1526138) | 1526138..1526311 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| J5N95_RS07395 (1526717) | 1526717..1526782 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| J5N95_RS07400 (1526785) | 1526785..1526973 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| J5N95_RS07405 (1526984) | 1526984..1527196 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| J5N95_RS07410 (1527559) | 1527559..1528056 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| J5N95_RS07415 (1528053) | 1528053..1528586 | - | 534 | WP_001092971.1 | lysozyme | - |
| J5N95_RS07420 (1528583) | 1528583..1528894 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| J5N95_RS07425 (1528899) | 1528899..1529114 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| J5N95_RS21810 (1529334) | 1529334..1529504 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| J5N95_RS07430 (1529868) | 1529868..1530083 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| J5N95_RS07435 (1530384) | 1530384..1530596 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| J5N95_RS07440 (1530651) | 1530651..1530740 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| J5N95_RS07445 (1531018) | 1531018..1531770 | - | 753 | WP_001047135.1 | antitermination protein | - |
| J5N95_RS07450 (1531784) | 1531784..1532833 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| J5N95_RS07455 (1532835) | 1532835..1533113 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| J5N95_RS07460 (1533180) | 1533180..1533431 | - | 252 | WP_000980994.1 | protein Rem | - |
| J5N95_RS07465 (1533648) | 1533648..1533803 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| J5N95_RS07470 (1533875) | 1533875..1534162 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| J5N95_RS07475 (1534162) | 1534162..1534401 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| J5N95_RS07480 (1534426) | 1534426..1534731 | + | 306 | WP_001326990.1 | protein YdfV | - |
| J5N95_RS07485 (1534934) | 1534934..1535266 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| J5N95_RS07490 (1535703) | 1535703..1535852 | - | 150 | WP_011443592.1 | protein YdfW | - |
| J5N95_RS07495 (1535887) | 1535887..1536165 | - | 279 | Protein_1477 | protein YdfX | - |
| J5N95_RS07500 (1536149) | 1536149..1536379 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| J5N95_RS07505 (1536463) | 1536463..1536870 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| J5N95_RS07510 (1537037) | 1537037..1537192 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| J5N95_RS22040 (1537194) | 1537194..1537322 | + | 129 | WP_000344964.1 | protein YdfB | - |
| J5N95_RS07515 (1537352) | 1537352..1537570 | + | 219 | WP_001171942.1 | protein YdfC | - |
| J5N95_RS07520 (1538138) | 1538138..1538326 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| J5N95_RS07525 (1538323) | 1538323..1538514 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| J5N95_RS07530 (1538607) | 1538607..1539374 | + | 768 | Protein_1485 | exonuclease | - |
| J5N95_RS07535 (1539371) | 1539371..1540066 | + | 696 | Protein_1486 | IS3 family transposase IS2 | Transposase |
| J5N95_RS07540 (1540080) | 1540080..1541237 | + | 1158 | Protein_1487 | Putative defective protein IntQ ; Integrase | Integrase |
| J5N95_RS07550 (1541425) | 1541425..1542444 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| J5N95_RS07555 (1542456) | 1542456..1543670 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| J5N95_RS07560 (1543876) | 1543876..1544202 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| J5N95_RS07565 (1544337) | 1544337..1544678 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| J5N95_RS07570 (1544713) | 1544713..1545273 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| J5N95_RS07575 (1545276) | 1545276..1545986 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| J5N95_RS07580 (1546094) | 1546094..1546399 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| J5N95_RS07585 (1546598) | 1546598..1549024 | + | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| J5N95_RS07590 (1549085) | 1549085..1551508 | + | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| J5N95_RS07595 (1551519) | 1551519..1552136 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| J5N95_RS07600 (1552138) | 1552138..1552992 | + | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| J5N95_RS07605 (1553035) | 1553035..1553649 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| J5N95_RS07610 (1553808) | 1553808..1555100 | + | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| J5N95_RS07615 (1555053) | 1555053..1555748 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| J5N95_RS07620 (1555873) | 1555873..1557093 | - | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0 |