MGE detailed information
MGE type: Prophage MGE length: 38591 bp
Accession: NZ_CP071521 Location: 2215898..2254488 Organism: Escherichia coli strain 11202 Replicon: chromosome
Accession: NZ_CP071521 Location: 2215898..2254488 Organism: Escherichia coli strain 11202 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J2D70_RS10640 (2211989) | 2211989..2212354 | + | 366 | WP_000276149.1 | multidrug/spermidine efflux SMR transporter subunit MdtJ | - |
| J2D70_RS10645 (2212341) | 2212341..2212670 | + | 330 | WP_000046661.1 | multidrug/spermidine efflux SMR transporter subunit MdtI | - |
| J2D70_RS10650 (2212709) | 2212709..2213530 | - | 822 | WP_001260865.1 | serine protease | - |
| J2D70_RS10655 (2213630) | 2213630..2213713 | - | 84 | WP_000233093.1 | stationary phase-induced protein | - |
| J2D70_RS10660 (2213806) | 2213806..2214114 | - | 309 | WP_001340364.1 | acid resistance repetitive basic protein Asr | - |
| J2D70_RS10670 (2214538) | 2214538..2215791 | - | 1254 | WP_000091840.1 | MFS transporter | - |
| J2D70_RS10675 (2215898) | 2215898..2216791 | + | 894 | WP_001019525.1 | hypothetical protein | VF |
| J2D70_RS10680 (2216926) | 2216926..2218146 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| J2D70_RS10685 (2218271) | 2218271..2218966 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| J2D70_RS10690 (2218919) | 2218919..2220211 | - | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| J2D70_RS10695 (2220370) | 2220370..2220984 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| J2D70_RS10700 (2221027) | 2221027..2221881 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| J2D70_RS10705 (2221883) | 2221883..2222500 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| J2D70_RS10710 (2222511) | 2222511..2224934 | - | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| J2D70_RS10715 (2224995) | 2224995..2227421 | - | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| J2D70_RS10720 (2227620) | 2227620..2227925 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| J2D70_RS10725 (2228033) | 2228033..2228743 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| J2D70_RS10730 (2228746) | 2228746..2229306 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| J2D70_RS10735 (2229341) | 2229341..2229682 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| J2D70_RS10740 (2229817) | 2229817..2230143 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| J2D70_RS10745 (2230349) | 2230349..2231563 | + | 1215 | WP_207184758.1 | D-galactonate dehydratase family protein | - |
| J2D70_RS10750 (2231575) | 2231575..2232594 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| J2D70_RS10755 (2232782) | 2232782..2233939 | - | 1158 | Protein_2112 | hypothetical protein ; Integrase | Integrase |
| J2D70_RS10760 (2233953) | 2233953..2234648 | - | 696 | Protein_2113 | IS3 family transposase IS2 | Transposase |
| J2D70_RS10765 (2234645) | 2234645..2235412 | - | 768 | Protein_2114 | exonuclease | - |
| J2D70_RS10770 (2235505) | 2235505..2235696 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| J2D70_RS10775 (2235693) | 2235693..2235881 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| J2D70_RS10780 (2236449) | 2236449..2236667 | - | 219 | WP_001171942.1 | protein YdfC | - |
| J2D70_RS23000 (2236697) | 2236697..2236825 | - | 129 | WP_000344964.1 | protein YdfB | - |
| J2D70_RS10785 (2236827) | 2236827..2236982 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| J2D70_RS10790 (2237149) | 2237149..2237556 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| J2D70_RS10795 (2237640) | 2237640..2237870 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| J2D70_RS10800 (2237854) | 2237854..2238132 | + | 279 | Protein_2122 | protein YdfX | - |
| J2D70_RS10805 (2238167) | 2238167..2238316 | + | 150 | WP_011443592.1 | protein YdfW | - |
| J2D70_RS10810 (2238753) | 2238753..2239085 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| J2D70_RS10815 (2239288) | 2239288..2239593 | - | 306 | WP_001326990.1 | protein YdfV | - |
| J2D70_RS10820 (2239618) | 2239618..2239857 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| J2D70_RS10825 (2239857) | 2239857..2240144 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| J2D70_RS10830 (2240216) | 2240216..2240371 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| J2D70_RS10835 (2240588) | 2240588..2240839 | + | 252 | WP_000980994.1 | protein Rem | - |
| J2D70_RS10840 (2240906) | 2240906..2241184 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| J2D70_RS10845 (2241186) | 2241186..2242235 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| J2D70_RS10850 (2242249) | 2242249..2243001 | + | 753 | WP_001047135.1 | antitermination protein | - |
| J2D70_RS10855 (2243279) | 2243279..2243368 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| J2D70_RS10860 (2243423) | 2243423..2243635 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| J2D70_RS10865 (2243936) | 2243936..2244151 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| J2D70_RS10870 (2244515) | 2244515..2244685 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| J2D70_RS10875 (2244905) | 2244905..2245120 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| J2D70_RS10880 (2245125) | 2245125..2245436 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| J2D70_RS10885 (2245433) | 2245433..2245966 | + | 534 | WP_001092971.1 | lysozyme | - |
| J2D70_RS10890 (2245963) | 2245963..2246460 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| J2D70_RS10895 (2246823) | 2246823..2247035 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| J2D70_RS10900 (2247046) | 2247046..2247234 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| J2D70_RS10905 (2247237) | 2247237..2247302 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| J2D70_RS10915 (2247708) | 2247708..2247881 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| J2D70_RS10920 (2248033) | 2248033..2248443 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| J2D70_RS10925 (2248501) | 2248501..2248734 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| J2D70_RS10930 (2249123) | 2249123..2249692 | + | 570 | WP_000453588.1 | DNA-packaging protein | - |
| J2D70_RS10935 (2249643) | 2249643..2250605 | + | 963 | WP_001027733.1 | phage tail protein | - |
| J2D70_RS10940 (2250605) | 2250605..2251180 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| J2D70_RS10945 (2251278) | 2251278..2251868 | - | 591 | WP_000078178.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| J2D70_RS10950 (2252185) | 2252185..2252418 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| J2D70_RS10955 (2252487) | 2252487..2252600 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| J2D70_RS10960 (2253121) | 2253121..2254488 | + | 1368 | Protein_2153 | MHS family MFS transporter | - |
| J2D70_RS10965 (2254577) | 2254577..2256037 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| J2D70_RS10970 (2256072) | 2256072..2256275 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| J2D70_RS10975 (2256452) | 2256452..2257138 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| J2D70_RS10980 (2257227) | 2257227..2257973 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.004 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.004 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.004 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.004 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.004 |