MGE detailed information
MGE type: Prophage MGE length: 28207 bp
Accession: NZ_CP070962 Location: 1907593..1935799 Organism: Escherichia coli strain K-12 J53 Replicon: chromosome
Accession: NZ_CP070962 Location: 1907593..1935799 Organism: Escherichia coli strain K-12 J53 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JTR57_RS09255 (1904968) | 1904968..1907394 | - | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| JTR57_RS09260 (1907593) | 1907593..1907898 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| JTR57_RS09265 (1908006) | 1908006..1908716 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| JTR57_RS09270 (1908719) | 1908719..1909279 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| JTR57_RS09275 (1909314) | 1909314..1909655 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| JTR57_RS09280 (1909790) | 1909790..1910116 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| JTR57_RS09285 (1910322) | 1910322..1911536 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| JTR57_RS09290 (1911548) | 1911548..1912567 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| JTR57_RS09295 (1912755) | 1912755..1913912 | - | 1158 | Protein_1819 | Tyrosine recombinase XerD ; Integrase | Integrase |
| JTR57_RS09300 (1913926) | 1913926..1914621 | - | 696 | Protein_1820 | IS3 family transposase IS2 | Transposase |
| JTR57_RS09305 (1914618) | 1914618..1915385 | - | 768 | Protein_1821 | exonuclease | - |
| JTR57_RS09310 (1915478) | 1915478..1915669 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| JTR57_RS09315 (1915666) | 1915666..1915854 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| JTR57_RS09320 (1916422) | 1916422..1916640 | - | 219 | WP_001171942.1 | protein YdfC | - |
| JTR57_RS23500 (1916670) | 1916670..1916798 | - | 129 | WP_000344964.1 | protein YdfB | - |
| JTR57_RS09325 (1916800) | 1916800..1916955 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| JTR57_RS09330 (1917122) | 1917122..1917529 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| JTR57_RS09335 (1917613) | 1917613..1917843 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| JTR57_RS09340 (1917827) | 1917827..1918105 | + | 279 | Protein_1829 | protein YdfX | - |
| JTR57_RS09345 (1918140) | 1918140..1918289 | + | 150 | WP_011443592.1 | protein YdfW | - |
| JTR57_RS09350 (1918726) | 1918726..1919058 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| JTR57_RS09355 (1919261) | 1919261..1919566 | - | 306 | WP_001326990.1 | protein YdfV | - |
| JTR57_RS09360 (1919591) | 1919591..1919830 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| JTR57_RS09365 (1919830) | 1919830..1920117 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| JTR57_RS09370 (1920189) | 1920189..1920344 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| JTR57_RS09375 (1920561) | 1920561..1920812 | + | 252 | WP_000980994.1 | protein Rem | - |
| JTR57_RS09380 (1920879) | 1920879..1921157 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| JTR57_RS09385 (1921159) | 1921159..1922208 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| JTR57_RS09390 (1922222) | 1922222..1922974 | + | 753 | WP_001047135.1 | antitermination protein | - |
| JTR57_RS09395 (1923252) | 1923252..1923341 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| JTR57_RS09400 (1923396) | 1923396..1923608 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| JTR57_RS09405 (1923909) | 1923909..1924124 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| JTR57_RS09410 (1924488) | 1924488..1924658 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| JTR57_RS09415 (1924878) | 1924878..1925093 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| JTR57_RS09420 (1925098) | 1925098..1925409 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| JTR57_RS09425 (1925406) | 1925406..1925939 | + | 534 | WP_001092971.1 | lysozyme | - |
| JTR57_RS09430 (1925936) | 1925936..1926433 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| JTR57_RS09435 (1926796) | 1926796..1927008 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| JTR57_RS09440 (1927019) | 1927019..1927207 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| JTR57_RS09445 (1927257) | 1927257..1928465 | - | 1209 | WP_001339197.1 | IS4 family transposase IS10R | Transposase |
| JTR57_RS09455 (1929019) | 1929019..1929192 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| JTR57_RS09460 (1929344) | 1929344..1929754 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| JTR57_RS09465 (1929812) | 1929812..1930045 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| JTR57_RS09470 (1930434) | 1930434..1931003 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| JTR57_RS09475 (1930954) | 1930954..1931916 | + | 963 | WP_001027733.1 | phage tail protein | - |
| JTR57_RS09480 (1931916) | 1931916..1932491 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| JTR57_RS09485 (1932589) | 1932589..1933179 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| JTR57_RS09490 (1933496) | 1933496..1933729 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| JTR57_RS09495 (1933798) | 1933798..1933911 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| JTR57_RS09500 (1934432) | 1934432..1935799 | + | 1368 | Protein_1860 | MHS family MFS transporter | - |
| JTR57_RS09505 (1935888) | 1935888..1937348 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| JTR57_RS09510 (1937383) | 1937383..1937586 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| JTR57_RS09515 (1937763) | 1937763..1938449 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| JTR57_RS09520 (1938538) | 1938538..1939284 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.006 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.007 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.007 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.007 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.008 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.007 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.01 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.007 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.005 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.007 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.007 |