MGE detailed information
MGE type: Prophage MGE length: 34798 bp
Accession: NZ_CP068281 Location: 2874303..2909100 Organism: Escherichia coli strain CY706 Replicon: chromosome
Accession: NZ_CP068281 Location: 2874303..2909100 Organism: Escherichia coli strain CY706 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJW04_RS13940 (2870818) | 2870818..2871564 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| JJW04_RS13945 (2871653) | 2871653..2872339 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| JJW04_RS13950 (2872516) | 2872516..2872719 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| JJW04_RS13955 (2872754) | 2872754..2874214 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| JJW04_RS13960 (2874303) | 2874303..2875670 | - | 1368 | Protein_2727 | MHS family MFS transporter | - |
| JJW04_RS13965 (2876191) | 2876191..2876304 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| JJW04_RS13970 (2876373) | 2876373..2876606 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| JJW04_RS13975 (2876923) | 2876923..2877513 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| JJW04_RS13980 (2877611) | 2877611..2878186 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| JJW04_RS13985 (2878186) | 2878186..2879148 | - | 963 | WP_001027733.1 | phage tail protein | - |
| JJW04_RS13990 (2879099) | 2879099..2879668 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| JJW04_RS13995 (2880057) | 2880057..2880290 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| JJW04_RS14000 (2880348) | 2880348..2880758 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| JJW04_RS14005 (2880910) | 2880910..2881083 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| JJW04_RS14010 (2881255) | 2881255..2881410 | - | 156 | WP_001309517.1 | protein YnfN | - |
| JJW04_RS14015 (2881489) | 2881489..2881554 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| JJW04_RS14020 (2881557) | 2881557..2881745 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| JJW04_RS14025 (2881756) | 2881756..2881968 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| JJW04_RS14030 (2882331) | 2882331..2882828 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| JJW04_RS14035 (2882825) | 2882825..2883358 | - | 534 | WP_001092971.1 | lysozyme | - |
| JJW04_RS14040 (2883355) | 2883355..2883666 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| JJW04_RS14045 (2883671) | 2883671..2883886 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| JJW04_RS14050 (2884106) | 2884106..2884276 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| JJW04_RS14055 (2884640) | 2884640..2884855 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| JJW04_RS14060 (2885156) | 2885156..2885368 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| JJW04_RS14065 (2885423) | 2885423..2885512 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| JJW04_RS14070 (2885790) | 2885790..2886542 | - | 753 | WP_001047135.1 | antitermination protein | - |
| JJW04_RS14075 (2886556) | 2886556..2887605 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| JJW04_RS14080 (2887607) | 2887607..2887885 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| JJW04_RS14085 (2887952) | 2887952..2888203 | - | 252 | WP_000980994.1 | protein Rem | - |
| JJW04_RS14090 (2888420) | 2888420..2888575 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| JJW04_RS14095 (2888647) | 2888647..2888934 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| JJW04_RS14100 (2888934) | 2888934..2889173 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| JJW04_RS14105 (2889198) | 2889198..2889503 | + | 306 | WP_001326990.1 | protein YdfV | - |
| JJW04_RS14110 (2889706) | 2889706..2890038 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| JJW04_RS14115 (2890475) | 2890475..2890624 | - | 150 | WP_011443592.1 | protein YdfW | - |
| JJW04_RS14120 (2890659) | 2890659..2890937 | - | 279 | Protein_2759 | hypothetical protein | - |
| JJW04_RS14125 (2890921) | 2890921..2891151 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| JJW04_RS14130 (2891235) | 2891235..2891642 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| JJW04_RS14135 (2891809) | 2891809..2891964 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| JJW04_RS23240 (2891966) | 2891966..2892094 | + | 129 | WP_000344964.1 | protein YdfB | - |
| JJW04_RS14140 (2892124) | 2892124..2892342 | + | 219 | WP_001171942.1 | protein YdfC | - |
| JJW04_RS14145 (2892910) | 2892910..2893098 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| JJW04_RS14150 (2893095) | 2893095..2893286 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| JJW04_RS14155 (2893379) | 2893379..2894146 | + | 768 | Protein_2767 | exonuclease | - |
| JJW04_RS14160 (2894143) | 2894143..2894649 | + | 507 | Protein_2768 | IS3 family transposase IS2 | Transposase |
| JJW04_RS14170 (2895977) | 2895977..2896174 | + | 198 | Protein_2770 | IS3 family transposase IS2 | Transposase |
| JJW04_RS14175 (2896188) | 2896188..2897345 | + | 1158 | Protein_2771 | Putative defective protein IntQ ; Integrase | Integrase |
| JJW04_RS14180 (2897533) | 2897533..2898552 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| JJW04_RS14185 (2898564) | 2898564..2899778 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| JJW04_RS14190 (2899984) | 2899984..2900310 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| JJW04_RS14195 (2900445) | 2900445..2900786 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| JJW04_RS14200 (2900821) | 2900821..2901381 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| JJW04_RS14205 (2901384) | 2901384..2902094 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| JJW04_RS14210 (2902202) | 2902202..2902507 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| JJW04_RS14215 (2902706) | 2902706..2905132 | + | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| JJW04_RS14220 (2905193) | 2905193..2907616 | + | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| JJW04_RS14225 (2907627) | 2907627..2908244 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| JJW04_RS14230 (2908246) | 2908246..2909100 | + | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| JJW04_RS14235 (2909143) | 2909143..2909757 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| JJW04_RS14240 (2909916) | 2909916..2911208 | + | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| JJW04_RS14245 (2911161) | 2911161..2911856 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| JJW04_RS14250 (2911981) | 2911981..2913201 | - | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0 |