MGE detailed information
MGE type: Conjugative plasmid MGE length: 155756 bp
Accession: NZ_CP062867 Location: 1..155756 Organism: Escherichia coli O39:H21 strain Res13-Lact-PEB08-01 Replicon: plasmid unnamed972
Accession: NZ_CP062867 Location: 1..155756 Organism: Escherichia coli O39:H21 strain Res13-Lact-PEB08-01 Replicon: plasmid unnamed972
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IMP90_RS23515 () | 1..978 | + | 978 | WP_000361612.1 | RepB family plasmid replication initiator protein | - |
| IMP90_RS23520 () | 1257..1997 | - | 741 | WP_001066941.1 | tyrosine-type recombinase/integrase | - |
| IMP90_RS23525 () | 2118..2306 | - | 189 | WP_014640565.1 | hypothetical protein | - |
| IMP90_RS23530 () | 2397..3094 | + | 698 | Protein_3 | IS1 family transposase | - |
| IMP90_RS23535 () | 3172..4561 | - | 1390 | Protein_4 | ISNCY family transposase | - |
| IMP90_RS23540 () | 4871..5020 | - | 150 | Protein_5 | IS3 family transposase | - |
| IMP90_RS23545 () | 5198..6391 | - | 1194 | WP_000450494.1 | GTP-binding protein | - |
| IMP90_RS23550 () | 7614..8850 | - | 1237 | Protein_7 | IS3 family transposase | - |
| IMP90_RS23555 () | 9477..9770 | + | 294 | WP_000738422.1 | increased serum survival lipoprotein Iss | - |
| IMP90_RS23560 () | 9828..10003 | - | 176 | Protein_9 | lysis protein | - |
| IMP90_RS23565 () | 10581..11679 | + | 1099 | Protein_10 | transposase | - |
| IMP90_RS23570 () | 12915..14030 | + | 1116 | WP_001318220.1 | salmochelin biosynthesis C-glycosyltransferase IroB | - |
| IMP90_RS23575 () | 14170..17829 | + | 3660 | WP_195706875.1 | ABC transporter ATP-binding protein/permease | - |
| IMP90_RS23580 () | 17933..19162 | + | 1230 | WP_000933675.1 | catecholate siderophore esterase IroD | - |
| IMP90_RS23585 () | 19247..20203 | + | 957 | WP_000271276.1 | catecholate siderophore esterase IroE | - |
| IMP90_RS23590 () | 20248..22425 | - | 2178 | WP_001222186.1 | siderophore salmochelin receptor IroN | - |
| IMP90_RS23595 () | 23280..24314 | - | 1035 | WP_001190234.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| IMP90_RS23600 () | 24873..25220 | - | 348 | WP_000142437.1 | hypothetical protein | - |
| IMP90_RS23605 () | 25522..26004 | - | 483 | WP_001311056.1 | hypothetical protein | - |
| IMP90_RS23610 () | 26121..26969 | - | 849 | WP_001058005.1 | 3'-5' exonuclease | - |
| IMP90_RS23615 () | 27015..27296 | - | 282 | WP_000969990.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| IMP90_RS23620 () | 27293..27562 | - | 270 | WP_000079941.1 | hypothetical protein | Antitoxin Detail |
| IMP90_RS23625 () | 28084..29320 | + | 1237 | Protein_22 | IS3 family transposase | - |
| IMP90_RS23630 () | 29517..30791 | + | 1275 | WP_172836775.1 | HlyD family secretion protein | - |
| IMP90_RS23635 () | 30766..32880 | + | 2115 | WP_109045958.1 | peptidase domain-containing ABC transporter | - |
| IMP90_RS23640 () | 33050..33361 | - | 312 | WP_001259758.1 | colicin V | - |
| IMP90_RS23645 () | 33339..33575 | - | 237 | WP_014640552.1 | colicin V immunity protein | - |
| IMP90_RS23650 () | 34039..34320 | - | 282 | WP_001105066.1 | hypothetical protein | - |
| IMP90_RS23655 () | 34493..34660 | + | 168 | Protein_28 | colicin-B | - |
| IMP90_RS23660 () | 34678..35205 | - | 528 | WP_000203272.1 | colicin B immunity protein | - |
| IMP90_RS23665 () | 35449..36264 | + | 816 | WP_001312845.1 | lipid II-degrading bacteriocin colicin M | - |
| IMP90_RS23670 () | 36314..36667 | - | 354 | WP_000864812.1 | colicin M immunity protein | - |
| IMP90_RS23675 () | 36845..37636 | - | 792 | WP_000016493.1 | site-specific integrase | - |
| IMP90_RS23680 () | 37633..38322 | - | 690 | WP_089583722.1 | hypothetical protein | - |
| IMP90_RS23685 () | 38366..38716 | - | 351 | WP_000493379.1 | hypothetical protein | - |
| IMP90_RS23690 () | 39125..40690 | + | 1566 | WP_001128474.1 | AAA family ATPase | - |
| IMP90_RS23695 () | 40675..41697 | + | 1023 | WP_000361402.1 | helicase UvrD | - |
| IMP90_RS23700 () | 41722..42408 | - | 687 | Protein_37 | IS1 family transposase | - |
| IMP90_RS23705 () | 42590..46723 | - | 4134 | WP_063085579.1 | temperature-sensitive protease autotransporter hemagglutinin Tsh | - |
| IMP90_RS23710 () | 46894..47085 | + | 192 | Protein_39 | IS91 family transposase | - |
| IMP90_RS23715 () | 47053..47268 | - | 216 | Protein_40 | helix-turn-helix transcriptional regulator | - |
| IMP90_RS23720 () | 47364..47621 | + | 258 | Protein_41 | IS3 family transposase | - |
| IMP90_RS23725 () | 47689..48840 | + | 1152 | WP_001373172.1 | IS30-like element IS30 family transposase | - |
| IMP90_RS23730 () | 48853..49155 | - | 303 | Protein_43 | transposase | - |
| IMP90_RS23740 () | 50848..54681 | - | 3834 | WP_195706876.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| IMP90_RS23745 () | 55167..55844 | + | 678 | WP_001682408.1 | IS66-like element accessory protein TnpA | - |
| IMP90_RS23750 () | 55844..56191 | + | 348 | WP_000624622.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| IMP90_RS23755 () | 56211..57782 | + | 1572 | WP_000381395.1 | IS66 family transposase | - |
| IMP90_RS23760 () | 58015..59228 | + | 1214 | WP_162841971.1 | IS3 family transposase | - |
| IMP90_RS23765 () | 59505..59792 | - | 288 | WP_000222766.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| IMP90_RS23770 () | 59789..60040 | - | 252 | WP_001132900.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| IMP90_RS23775 () | 61006..61863 | - | 858 | WP_000131010.1 | incFII family plasmid replication initiator RepA | - |
| IMP90_RS23780 () | 61856..61930 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| IMP90_RS23785 () | 62177..62425 | - | 249 | WP_000083835.1 | replication regulatory protein RepA | - |
| IMP90_RS23790 () | 62709..62915 | - | 207 | WP_001553767.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 62902..62963 | + | 62 | NuclAT_2 | - | Antitoxin Detail |
| - () | 62902..62963 | + | 62 | NuclAT_2 | - | Antitoxin Detail |
| - () | 62902..62963 | + | 62 | NuclAT_2 | - | Antitoxin Detail |
| - () | 62902..62963 | + | 62 | NuclAT_2 | - | Antitoxin Detail |
| IMP90_RS23795 () | 63138..63520 | - | 383 | Protein_56 | hypothetical protein | - |
| IMP90_RS23800 () | 63623..64084 | - | 462 | WP_000760078.1 | thermonuclease family protein | - |
| IMP90_RS23805 () | 64565..65242 | + | 678 | WP_001682408.1 | IS66-like element accessory protein TnpA | - |
| IMP90_RS23810 () | 65242..65589 | + | 348 | WP_000624622.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| IMP90_RS23815 () | 65609..67180 | + | 1572 | WP_000381395.1 | IS66 family transposase | - |
| IMP90_RS23820 () | 67248..69401 | + | 2154 | WP_000009324.1 | type IV conjugative transfer system coupling protein TraD | - |
| IMP90_RS23825 () | 69410..69808 | - | 399 | WP_000911313.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| IMP90_RS23830 () | 69808..70035 | - | 228 | WP_000450520.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| IMP90_RS23835 () | 70117..75387 | + | 5271 | WP_000986969.1 | conjugative transfer relaxase/helicase TraI | - |
| IMP90_RS23840 () | 75407..76153 | + | 747 | WP_000205745.1 | conjugal transfer pilus acetylase TraX | - |
| IMP90_RS23845 () | 76212..77072 | + | 861 | WP_000704512.1 | alpha/beta hydrolase | - |
| IMP90_RS23850 () | 77175..77732 | + | 558 | WP_000139312.1 | fertility inhibition protein FinO | - |
| IMP90_RS23855 () | 77887..78090 | + | 204 | WP_001327131.1 | hypothetical protein | - |
| IMP90_RS23860 () | 78444..80015 | - | 1572 | WP_000381395.1 | IS66 family transposase | - |
| IMP90_RS23865 () | 80035..80382 | - | 348 | WP_000624622.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| IMP90_RS23870 () | 80382..81059 | - | 678 | WP_001682408.1 | IS66-like element accessory protein TnpA | - |
| IMP90_RS23875 () | 81113..82555 | - | 1443 | Protein_72 | IS66 family transposase | - |
| IMP90_RS23880 () | 82575..82922 | - | 348 | WP_000624622.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| IMP90_RS23885 () | 82922..83599 | - | 678 | WP_001682408.1 | IS66-like element accessory protein TnpA | - |
| IMP90_RS23890 () | 83876..84607 | - | 732 | WP_023565183.1 | complement resistance protein TraT | - |
| IMP90_RS23895 () | 84639..85136 | - | 498 | WP_000605859.1 | entry exclusion protein | - |
| IMP90_RS23900 () | 85152..87974 | - | 2823 | WP_001007016.1 | conjugal transfer mating pair stabilization protein TraG | - |
| IMP90_RS23905 () | 87971..89344 | - | 1374 | WP_001517790.1 | conjugal transfer protein TraH | - |
| IMP90_RS23910 () | 89344..89757 | - | 414 | WP_001331260.1 | F-type conjugal transfer protein TrbF | - |
| IMP90_RS23915 () | 89711..90052 | - | 342 | WP_001443031.1 | P-type conjugative transfer protein TrbJ | - |
| IMP90_RS23920 () | 89982..90527 | - | 546 | WP_000059851.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| IMP90_RS23925 () | 90514..90798 | - | 285 | WP_000624109.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| IMP90_RS23930 () | 90879..91193 | + | 315 | WP_000415566.1 | protein ArtA | - |
| IMP90_RS23935 () | 91195..91542 | - | 348 | WP_001287910.1 | conjugal transfer protein TrbA | - |
| IMP90_RS23940 () | 91558..92301 | - | 744 | WP_001030378.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| IMP90_RS23945 () | 92294..92551 | - | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| IMP90_RS23950 () | 92578..94386 | - | 1809 | WP_000821840.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| IMP90_RS23955 () | 94383..95021 | - | 639 | WP_000777690.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| IMP90_RS23960 () | 95030..96022 | - | 993 | WP_000830835.1 | conjugal transfer pilus assembly protein TraU | - |
| IMP90_RS23965 () | 96019..96651 | - | 633 | WP_001203750.1 | type-F conjugative transfer system protein TraW | - |
| IMP90_RS23970 () | 96648..97034 | - | 387 | WP_000099693.1 | type-F conjugative transfer system protein TrbI | - |
| IMP90_RS23975 () | 97031..99658 | - | 2628 | WP_001064265.1 | type IV secretion system protein TraC | - |
| IMP90_RS23980 () | 99818..100039 | - | 222 | WP_001278686.1 | conjugal transfer protein TraR | - |
| IMP90_RS23985 () | 100174..100689 | - | 516 | WP_000809885.1 | type IV conjugative transfer system lipoprotein TraV | - |
| IMP90_RS23990 () | 100686..100937 | - | 252 | WP_001038331.1 | conjugal transfer protein TrbG | - |
| IMP90_RS23995 () | 100930..101298 | - | 369 | WP_071526483.1 | DUF2689 domain-containing protein | - |
| IMP90_RS24000 () | 101237..101818 | - | 582 | WP_023565182.1 | conjugal transfer protein TraP | - |
| IMP90_RS24005 () | 101787..103238 | - | 1452 | WP_000146659.1 | conjugal transfer protein TraB | - |
| IMP90_RS24010 () | 103238..103942 | - | 705 | WP_148935590.1 | type-F conjugative transfer system secretin TraK | - |
| IMP90_RS24015 () | 103953..104519 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| IMP90_RS24020 () | 104541..104852 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| IMP90_RS24025 () | 104857..105219 | - | 363 | WP_000994784.1 | type IV conjugative transfer system pilin TraA | - |
| IMP90_RS24030 () | 105252..105647 | - | 396 | WP_001366159.1 | conjugal transfer relaxosome protein TraY | - |
| IMP90_RS24035 () | 105746..106435 | - | 690 | WP_000283383.1 | conjugal transfer transcriptional regulator TraJ | - |
| IMP90_RS24040 () | 106622..107005 | - | 384 | WP_001151528.1 | relaxosome protein TraM | - |
| IMP90_RS24045 () | 107326..107928 | + | 603 | WP_000243710.1 | transglycosylase SLT domain-containing protein | - |
| IMP90_RS24050 () | 108225..109046 | - | 822 | WP_001234423.1 | DUF945 domain-containing protein | - |
| IMP90_RS24055 () | 109166..109363 | - | 198 | WP_052318758.1 | hypothetical protein | - |
| IMP90_RS24060 () | 110373..110531 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 110575..110606 | - | 32 | NuclAT_1 | - | Antitoxin Detail |
| - () | 110575..110606 | - | 32 | NuclAT_1 | - | Antitoxin Detail |
| - () | 110575..110606 | - | 32 | NuclAT_1 | - | Antitoxin Detail |
| - () | 110575..110606 | - | 32 | NuclAT_1 | - | Antitoxin Detail |
| - () | 112048..112245 | - | 198 | NuclAT_0 | - | - |
| - () | 112048..112245 | - | 198 | NuclAT_0 | - | - |
| - () | 112048..112245 | - | 198 | NuclAT_0 | - | - |
| - () | 112048..112245 | - | 198 | NuclAT_0 | - | - |
| IMP90_RS24070 () | 112057..112245 | + | 189 | WP_001299721.1 | hypothetical protein | - |
| IMP90_RS24075 () | 112257..112976 | - | 720 | WP_001276232.1 | plasmid SOS inhibition protein A | - |
| IMP90_RS24080 () | 112973..113407 | - | 435 | WP_000845932.1 | conjugation system SOS inhibitor PsiB | - |
| IMP90_RS24085 () | 113462..115420 | - | 1959 | Protein_114 | ParB/RepB/Spo0J family partition protein | - |
| IMP90_RS24090 () | 115486..115719 | - | 234 | WP_000005990.1 | DUF905 family protein | - |
| IMP90_RS24095 () | 115782..116234 | - | 453 | WP_000290843.1 | single-stranded DNA-binding protein | - |
| IMP90_RS24100 () | 116260..116466 | - | 207 | WP_024190028.1 | hypothetical protein | - |
| IMP90_RS24105 () | 116877..117086 | - | 210 | WP_021512934.1 | hypothetical protein | - |
| IMP90_RS24110 () | 117112..117675 | - | 564 | WP_001315564.1 | class I SAM-dependent methyltransferase | - |
| IMP90_RS24115 () | 117723..119084 | - | 1362 | WP_000170724.1 | DUF3560 domain-containing protein | - |
| IMP90_RS24120 () | 119136..119366 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| IMP90_RS24125 () | 119880..120128 | + | 249 | WP_071526484.1 | hypothetical protein | - |
| IMP90_RS24130 () | 120401..120592 | - | 192 | WP_001027519.1 | hypothetical protein | - |
| IMP90_RS24135 () | 120589..121011 | - | 423 | WP_000271751.1 | DUF1380 family protein | - |
| IMP90_RS24140 () | 121058..121360 | - | 303 | WP_077632858.1 | antirestriction protein | - |
| IMP90_RS24145 () | 121900..122670 | - | 771 | WP_001006209.1 | hypothetical protein | - |
| IMP90_RS24150 () | 122715..123149 | - | 435 | WP_000274502.1 | DUF1380 family protein | - |
| IMP90_RS24155 () | 123163..123384 | - | 222 | WP_001104879.1 | hypothetical protein | - |
| IMP90_RS24160 () | 123385..124068 | - | 684 | WP_000085871.1 | DNA methylase | - |
| IMP90_RS24165 () | 124144..124456 | - | 313 | Protein_130 | hypothetical protein | - |
| IMP90_RS24170 () | 124453..125355 | - | 903 | WP_001348079.1 | DUF1281 domain-containing protein | - |
| IMP90_RS24175 () | 126090..127061 | - | 972 | WP_000817031.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| IMP90_RS24180 () | 127061..128227 | - | 1167 | WP_000772446.1 | plasmid-partitioning protein SopA | - |
| IMP90_RS24185 () | 128815..129570 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| IMP90_RS24190 () | 130292..131098 | - | 807 | WP_000016970.1 | site-specific integrase | - |
| IMP90_RS24195 () | 131099..131404 | - | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| IMP90_RS24200 () | 131406..131624 | - | 219 | WP_000813630.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| IMP90_RS24205 () | 132252..132482 | + | 231 | WP_001261286.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| IMP90_RS24210 () | 132479..132895 | + | 417 | WP_001034044.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| IMP90_RS24215 () | 132970..134535 | + | 1566 | WP_001128474.1 | AAA family ATPase | - |
| IMP90_RS24220 () | 134520..135542 | + | 1023 | WP_000361402.1 | helicase UvrD | - |
| IMP90_RS24225 () | 135796..136482 | - | 687 | Protein_142 | IS1 family transposase | - |
| IMP90_RS24230 () | 136838..137752 | + | 915 | WP_000949005.1 | iron/manganese ABC transporter substrate-binding protein SitA | - |
| IMP90_RS24235 () | 137752..138579 | + | 828 | WP_000983710.1 | iron/manganese ABC transporter ATP-binding protein SitB | - |
| IMP90_RS24240 () | 138576..139433 | + | 858 | WP_195706874.1 | metal ABC transporter permease | - |
| IMP90_RS24245 () | 139430..140287 | + | 858 | WP_000968139.1 | iron/manganese ABC transporter permease subunit SitD | - |
| IMP90_RS24250 () | 140521..140778 | - | 258 | Protein_147 | Tn3 family transposase | - |
| IMP90_RS24255 () | 140776..141189 | + | 414 | Protein_148 | phosphopyruvate hydratase | - |
| IMP90_RS24260 () | 141530..141910 | + | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| IMP90_RS24265 () | 142290..143483 | - | 1194 | WP_000095526.1 | MFS transporter | - |
| IMP90_RS24270 () | 143619..145343 | + | 1725 | WP_000602863.1 | aerobactin synthase IucA | - |
| IMP90_RS24275 () | 145344..146291 | + | 948 | WP_000011908.1 | N(6)-hydroxylysine O-acetyltransferase | - |
| IMP90_RS24280 () | 146291..148033 | + | 1743 | WP_001015721.1 | aerobactin synthase IucC | - |
| IMP90_RS24285 () | 148030..149307 | + | 1278 | WP_000750130.1 | NADPH-dependent L-lysine N(6)-monooxygenase | - |
| IMP90_RS24290 () | 149389..151590 | + | 2202 | WP_000973519.1 | ferric aerobactin receptor IutA | - |
| IMP90_RS24295 () | 151872..153094 | + | 1223 | WP_165419135.1 | IS3-like element IS2 family transposase | - |
| IMP90_RS24300 () | 153145..153831 | + | 687 | Protein_157 | IS1 family transposase | - |
| IMP90_RS24305 () | 154011..154524 | - | 514 | Protein_158 | DUF4113 domain-containing protein | - |
| IMP90_RS24310 () | 154585..154689 | - | 105 | Protein_159 | AAA family ATPase | - |
| IMP90_RS24315 () | 154691..155014 | - | 324 | Protein_160 | helix-turn-helix domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|