MGE detailed information
MGE type: Prophage MGE length: 31500 bp
Accession: NZ_CP047594 Location: 2235900..2267399 Organism: Escherichia coli strain LD27-1 Replicon: chromosome
Accession: NZ_CP047594 Location: 2235900..2267399 Organism: Escherichia coli strain LD27-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GUU88_RS10810 () | 2232415..2233161 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| GUU88_RS10815 () | 2233250..2233936 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| GUU88_RS10820 () | 2234113..2234316 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| GUU88_RS10825 () | 2234351..2235811 | - | 1461 | WP_000527809.1 | mannitol dehydrogenase family protein | - |
| GUU88_RS10830 () | 2235900..2237267 | - | 1368 | Protein_2114 | MHS family MFS transporter | - |
| GUU88_RS10835 () | 2237789..2237902 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| GUU88_RS10840 () | 2237971..2238204 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| GUU88_RS10845 () | 2238521..2239111 | + | 591 | WP_000078178.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| GUU88_RS10850 () | 2239209..2239784 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| GUU88_RS10855 () | 2239784..2240332 | - | 549 | WP_074153768.1 | S49 family peptidase | - |
| GUU88_RS10860 () | 2240341..2241486 | - | 1146 | Protein_2120 | phage terminase large subunit family protein | - |
| GUU88_RS10865 () | 2241461..2242006 | - | 546 | WP_000453611.1 | DNA-packaging protein | - |
| GUU88_RS10870 () | 2242395..2242628 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| GUU88_RS10875 () | 2242686..2243096 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| GUU88_RS10880 () | 2243248..2243421 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| GUU88_RS10885 () | 2243593..2243748 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| GUU88_RS10890 () | 2243827..2243892 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| GUU88_RS10895 () | 2243895..2244083 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| GUU88_RS10900 () | 2244094..2244306 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| GUU88_RS10905 () | 2244669..2245166 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| GUU88_RS10910 () | 2245163..2245696 | - | 534 | WP_001092971.1 | lysozyme | - |
| GUU88_RS10915 () | 2245693..2246004 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| GUU88_RS10920 () | 2246009..2246224 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| GUU88_RS10925 () | 2246978..2247193 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| GUU88_RS10930 () | 2247494..2247706 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| GUU88_RS10935 () | 2247761..2247850 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| GUU88_RS10940 () | 2248128..2248880 | - | 753 | WP_001047135.1 | antitermination protein | - |
| GUU88_RS10945 () | 2248894..2249568 | - | 675 | Protein_2137 | DUF968 domain-containing protein | - |
| GUU88_RS10950 () | 2249738..2249893 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| GUU88_RS10955 () | 2249965..2250252 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| GUU88_RS10960 () | 2250252..2250491 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| GUU88_RS10965 () | 2250516..2250821 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| GUU88_RS10970 () | 2251024..2251356 | + | 333 | WP_001301033.1 | protein FlxA | - |
| GUU88_RS10975 () | 2251793..2253106 | - | 1314 | WP_000589005.1 | ISNCY family transposase ISCARN112 | Transposase |
| GUU88_RS22820 () | 2254189..2254380 | - | 192 | Protein_2144 | hypothetical protein | - |
| GUU88_RS10990 () | 2254364..2254594 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| GUU88_RS10995 () | 2254678..2255085 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| GUU88_RS11000 () | 2255252..2255407 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| GUU88_RS11005 () | 2255567..2255776 | + | 210 | WP_032306542.1 | hypothetical protein | - |
| GUU88_RS11010 () | 2255832..2256851 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| GUU88_RS11015 () | 2256863..2258077 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| GUU88_RS11020 () | 2258283..2258609 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| GUU88_RS11025 () | 2258744..2259085 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| GUU88_RS11030 () | 2259120..2259680 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| GUU88_RS11035 () | 2259683..2260393 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| GUU88_RS11040 () | 2260501..2260806 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| GUU88_RS11045 () | 2261005..2263431 | + | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
| GUU88_RS11050 () | 2263492..2265915 | + | 2424 | WP_160194488.1 | dimethyl sulfoxide reductase subunit A | - |
| GUU88_RS11055 () | 2265926..2266543 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| GUU88_RS11060 () | 2266545..2267399 | + | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit | - |
| GUU88_RS11065 () | 2267442..2268056 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| GUU88_RS11070 () | 2268215..2269507 | + | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| GUU88_RS11075 () | 2269460..2270155 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| GUU88_RS11080 () | 2270280..2271500 | - | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.008 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.008 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.008 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.008 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.008 |