MGE detailed information
MGE type: Prophage MGE length: 28393 bp
Accession: NZ_CP047127 Location: 4091062..4119454 Organism: Escherichia coli K-12 Replicon: chromosome
Accession: NZ_CP047127 Location: 4091062..4119454 Organism: Escherichia coli K-12 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GRF62_RS19545 () | 4087311..4089737 | - | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
| GRF62_RS19550 () | 4089936..4090241 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| GRF62_RS19555 () | 4090349..4091059 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| GRF62_RS19560 () | 4091062..4091622 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| GRF62_RS19565 () | 4091657..4091998 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| GRF62_RS19570 () | 4092133..4092459 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| GRF62_RS19575 () | 4092665..4093879 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| GRF62_RS19580 () | 4093891..4094910 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| GRF62_RS19585 () | 4094968..4095078 | + | 111 | WP_001360138.1 | hypothetical protein | - |
| GRF62_RS19590 () | 4095098..4096255 | - | 1158 | Protein_3804 | Putative defective protein IntQ ; Integrase | Integrase |
| GRF62_RS19595 () | 4096269..4096964 | - | 696 | Protein_3805 | IS3 family transposase IS2 | Transposase |
| GRF62_RS19600 () | 4096961..4097728 | - | 768 | Protein_3806 | exonuclease | - |
| GRF62_RS19605 () | 4097821..4098012 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| GRF62_RS19610 () | 4098009..4098197 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| GRF62_RS19620 () | 4098765..4098983 | - | 219 | WP_001171942.1 | hypothetical protein | - |
| GRF62_RS19625 () | 4099143..4099298 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| GRF62_RS19630 () | 4099465..4099872 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| GRF62_RS19635 () | 4099956..4100186 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| GRF62_RS19640 () | 4100170..4100448 | + | 279 | Protein_3813 | hypothetical protein | - |
| GRF62_RS19645 () | 4100483..4100632 | + | 150 | WP_011443592.1 | hypothetical protein | - |
| GRF62_RS19650 () | 4101069..4101401 | - | 333 | WP_001301033.1 | protein FlxA | - |
| GRF62_RS19655 () | 4101604..4101909 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| GRF62_RS19660 () | 4101934..4102173 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| GRF62_RS19665 () | 4102173..4102460 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| GRF62_RS19670 () | 4102532..4102687 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| GRF62_RS19675 () | 4102904..4103155 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| GRF62_RS19680 () | 4103222..4103500 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| GRF62_RS19685 () | 4103502..4104551 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| GRF62_RS19690 () | 4104565..4105317 | + | 753 | WP_001047135.1 | antitermination protein | - |
| GRF62_RS19695 () | 4105595..4105684 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| GRF62_RS19700 () | 4105739..4105951 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| GRF62_RS19705 () | 4106252..4106467 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| GRF62_RS19710 () | 4107221..4107436 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| GRF62_RS19715 () | 4107441..4107752 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| GRF62_RS19720 () | 4107749..4108282 | + | 534 | WP_001092971.1 | lysozyme | - |
| GRF62_RS19725 () | 4108279..4108776 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| GRF62_RS19730 () | 4109139..4109351 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| GRF62_RS19735 () | 4109362..4109550 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| GRF62_RS19740 () | 4109553..4109618 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| GRF62_RS19745 () | 4109697..4109852 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| GRF62_RS19750 () | 4110024..4110197 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| GRF62_RS19755 () | 4110349..4110759 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| GRF62_RS19760 () | 4110817..4111050 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| GRF62_RS19765 () | 4111439..4112008 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| GRF62_RS19770 () | 4111959..4112921 | + | 963 | WP_001027733.1 | phage tail protein | - |
| GRF62_RS19775 () | 4112921..4113496 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| GRF62_RS19780 () | 4113594..4114184 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| GRF62_RS19785 () | 4114501..4114734 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| GRF62_RS19790 () | 4114803..4114916 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| GRF62_RS19795 () | 4115437..4116804 | + | 1368 | Protein_3844 | MHS family MFS transporter | - |
| GRF62_RS19800 () | 4116893..4118353 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| GRF62_RS19805 () | 4118388..4118591 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| GRF62_RS19810 () | 4118768..4119454 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| GRF62_RS19815 () | 4119543..4120289 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| GRF62_RS19820 () | 4120426..4122471 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| GRF62_RS19825 () | 4122515..4123033 | - | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| GRF62_RS19830 () | 4123309..4123701 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.009 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.01 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.01 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.007 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.01 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.01 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.01 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.006 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.007 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.01 |