MGE detailed information
MGE type: Prophage MGE length: 33462 bp
Accession: NZ_CP043183 Location: 2220212..2253673 Organism: Escherichia coli O16:H48 strain PG20180172 Replicon: chromosome
Accession: NZ_CP043183 Location: 2220212..2253673 Organism: Escherichia coli O16:H48 strain PG20180172 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYA19_RS10690 () | 2216111..2217331 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| FYA19_RS10695 () | 2217456..2218151 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| FYA19_RS10700 () | 2218104..2219396 | - | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| FYA19_RS10705 () | 2219555..2220169 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| FYA19_RS10710 () | 2220212..2221066 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit | - |
| FYA19_RS10715 () | 2221068..2221685 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| FYA19_RS10720 () | 2221696..2224119 | - | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| FYA19_RS10725 () | 2224180..2226606 | - | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
| FYA19_RS10730 () | 2226805..2227110 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| FYA19_RS10735 () | 2227218..2227928 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| FYA19_RS10740 () | 2227931..2228491 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| FYA19_RS10745 () | 2228526..2228867 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| FYA19_RS10750 () | 2229002..2229328 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| FYA19_RS10755 () | 2229534..2230748 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| FYA19_RS10760 () | 2230760..2231779 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| FYA19_RS10770 () | 2231967..2233124 | - | 1158 | Protein_2097 | Putative defective protein IntQ ; Integrase | Integrase |
| FYA19_RS10775 () | 2233138..2233833 | - | 696 | Protein_2098 | IS3 family transposase IS2 | Transposase |
| FYA19_RS10780 () | 2233830..2234597 | - | 768 | Protein_2099 | exonuclease | - |
| FYA19_RS10785 () | 2234690..2234881 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| FYA19_RS10790 () | 2234878..2235066 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| FYA19_RS10800 () | 2235634..2235852 | - | 219 | WP_001171942.1 | hypothetical protein | - |
| FYA19_RS10805 () | 2236012..2236167 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| FYA19_RS10810 () | 2236334..2236741 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| FYA19_RS10815 () | 2236825..2237055 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| FYA19_RS10820 () | 2237039..2237317 | + | 279 | Protein_2106 | hypothetical protein | - |
| FYA19_RS10825 () | 2237352..2237501 | + | 150 | WP_011443592.1 | hypothetical protein | - |
| FYA19_RS10830 () | 2237938..2238270 | - | 333 | WP_001301033.1 | protein FlxA | - |
| FYA19_RS10835 () | 2238473..2238778 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| FYA19_RS10840 () | 2238803..2239042 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| FYA19_RS10845 () | 2239042..2239329 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| FYA19_RS10850 () | 2239401..2239556 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| FYA19_RS10855 () | 2239773..2240024 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| FYA19_RS10860 () | 2240091..2240369 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| FYA19_RS10865 () | 2240371..2241420 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| FYA19_RS10870 () | 2241434..2242186 | + | 753 | WP_001047135.1 | antitermination protein | - |
| FYA19_RS10875 () | 2242464..2242553 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| FYA19_RS10880 () | 2242608..2242820 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| FYA19_RS10885 () | 2243121..2243336 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| FYA19_RS23170 () | 2243700..2243870 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| FYA19_RS10890 () | 2244090..2244305 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| FYA19_RS10895 () | 2244310..2244621 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| FYA19_RS10900 () | 2244618..2245151 | + | 534 | WP_001092971.1 | lysozyme | - |
| FYA19_RS10905 () | 2245148..2245645 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| FYA19_RS10910 () | 2246008..2246220 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| FYA19_RS10915 () | 2246231..2246419 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| FYA19_RS10920 () | 2246422..2246487 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| FYA19_RS10925 () | 2246566..2246721 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| FYA19_RS10930 () | 2246893..2247066 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| FYA19_RS10935 () | 2247218..2247628 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| FYA19_RS10940 () | 2247686..2247919 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| FYA19_RS10945 () | 2248308..2248877 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| FYA19_RS10950 () | 2248828..2249790 | + | 963 | WP_001027733.1 | phage tail protein | - |
| FYA19_RS10955 () | 2249790..2250365 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| FYA19_RS10960 () | 2250463..2251053 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| FYA19_RS10965 () | 2251370..2251603 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| FYA19_RS10970 () | 2251672..2251785 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| FYA19_RS10975 () | 2252306..2253673 | + | 1368 | Protein_2138 | MHS family MFS transporter | - |
| FYA19_RS10980 () | 2253762..2255222 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| FYA19_RS10985 () | 2255257..2255460 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| FYA19_RS10990 () | 2255637..2256323 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| FYA19_RS10995 () | 2256412..2257158 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0 |