MGE detailed information
MGE type: Prophage MGE length: 33462 bp
Accession: NZ_CP040663 Location: 1619919..1653380 Organism: Escherichia coli strain EK2009 Replicon: chromosome
Accession: NZ_CP040663 Location: 1619919..1653380 Organism: Escherichia coli strain EK2009 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FE383_RS07900 () | 1616434..1617180 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| FE383_RS07905 () | 1617269..1617955 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| FE383_RS07910 () | 1618132..1618335 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| FE383_RS07915 () | 1618370..1619830 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| FE383_RS07920 () | 1619919..1621286 | - | 1368 | Protein_1540 | MHS family MFS transporter | - |
| FE383_RS07925 () | 1621807..1621920 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| FE383_RS07930 () | 1621989..1622222 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| FE383_RS07935 () | 1622539..1623129 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| FE383_RS07940 () | 1623227..1623802 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| FE383_RS07945 () | 1623802..1624764 | - | 963 | WP_001027733.1 | phage tail protein | - |
| FE383_RS07950 () | 1624715..1625284 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| FE383_RS07955 () | 1625673..1625906 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| FE383_RS07960 () | 1625964..1626374 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| FE383_RS07965 () | 1626526..1626699 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| FE383_RS07970 () | 1626871..1627026 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| FE383_RS07975 () | 1627105..1627170 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| FE383_RS07980 () | 1627173..1627361 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| FE383_RS07985 () | 1627372..1627584 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| FE383_RS07990 () | 1627947..1628444 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| FE383_RS07995 () | 1628441..1628974 | - | 534 | WP_001092971.1 | lysozyme | - |
| FE383_RS08000 () | 1628971..1629282 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| FE383_RS08005 () | 1629287..1629502 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| FE383_RS22480 () | 1629722..1629892 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| FE383_RS08010 () | 1630256..1630471 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| FE383_RS08015 () | 1630772..1630984 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| FE383_RS08020 () | 1631039..1631128 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| FE383_RS08025 () | 1631406..1632158 | - | 753 | WP_001047135.1 | antitermination protein | - |
| FE383_RS08030 () | 1632172..1633221 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| FE383_RS08035 () | 1633223..1633501 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| FE383_RS08040 () | 1633568..1633819 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| FE383_RS08045 () | 1634036..1634191 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| FE383_RS08050 () | 1634263..1634550 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| FE383_RS08055 () | 1634550..1634789 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| FE383_RS08060 () | 1634814..1635119 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| FE383_RS08065 () | 1635322..1635654 | + | 333 | WP_001301033.1 | protein FlxA | - |
| FE383_RS08070 () | 1636091..1636240 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| FE383_RS08075 () | 1636275..1636553 | - | 279 | Protein_1572 | hypothetical protein | - |
| FE383_RS08080 () | 1636537..1636767 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| FE383_RS08085 () | 1636851..1637258 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| FE383_RS08090 () | 1637425..1637580 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| FE383_RS08095 () | 1637740..1637958 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| FE383_RS08105 () | 1638526..1638714 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| FE383_RS08110 () | 1638711..1638902 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| FE383_RS08115 () | 1638995..1639762 | + | 768 | Protein_1579 | exonuclease | - |
| FE383_RS08120 () | 1639759..1640454 | + | 696 | Protein_1580 | IS3 family transposase IS2 | Transposase |
| FE383_RS08125 () | 1640468..1641625 | + | 1158 | Protein_1581 | Putative defective protein IntQ ; Integrase | Integrase |
| FE383_RS08135 () | 1641813..1642832 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| FE383_RS08140 () | 1642844..1644058 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| FE383_RS08145 () | 1644264..1644590 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| FE383_RS08150 () | 1644725..1645066 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| FE383_RS08155 () | 1645101..1645661 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| FE383_RS08160 () | 1645664..1646374 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| FE383_RS08165 () | 1646482..1646787 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| FE383_RS08170 () | 1646986..1649412 | + | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
| FE383_RS08175 () | 1649473..1651896 | + | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| FE383_RS08180 () | 1651907..1652524 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| FE383_RS08185 () | 1652526..1653380 | + | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit | - |
| FE383_RS08190 () | 1653423..1654037 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| FE383_RS08195 () | 1654196..1655488 | + | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| FE383_RS08200 () | 1655441..1656136 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| FE383_RS08205 () | 1656261..1657481 | - | 1221 | WP_138795934.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0 |