MGE detailed information
MGE type: Prophage MGE length: 33462 bp
Accession: NZ_CP040643 Location: 1764966..1798427 Organism: Escherichia coli strain BE104 Replicon: chromosome
Accession: NZ_CP040643 Location: 1764966..1798427 Organism: Escherichia coli strain BE104 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FGC38_RS08765 () | 1761481..1762227 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| FGC38_RS08770 () | 1762316..1763002 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| FGC38_RS08775 () | 1763179..1763382 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| FGC38_RS08780 () | 1763417..1764877 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| FGC38_RS08785 () | 1764966..1766333 | - | 1368 | Protein_1702 | MHS family MFS transporter | - |
| FGC38_RS08790 () | 1766854..1766967 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| FGC38_RS08795 () | 1767036..1767269 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| FGC38_RS08800 () | 1767586..1768176 | + | 591 | WP_000078177.1 | recombinase family protein | - |
| FGC38_RS08805 () | 1768274..1768849 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| FGC38_RS08810 () | 1768849..1769811 | - | 963 | WP_001027733.1 | phage tail protein | - |
| FGC38_RS08815 () | 1769762..1770331 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| FGC38_RS08820 () | 1770720..1770953 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| FGC38_RS08825 () | 1771011..1771421 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| FGC38_RS08830 () | 1771573..1771746 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| FGC38_RS08835 () | 1771918..1772073 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| FGC38_RS08840 () | 1772152..1772217 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| FGC38_RS08845 () | 1772220..1772408 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| FGC38_RS08850 () | 1772419..1772631 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| FGC38_RS08855 () | 1772994..1773491 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| FGC38_RS08860 () | 1773488..1774021 | - | 534 | WP_001092971.1 | lysozyme | - |
| FGC38_RS08865 () | 1774018..1774329 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| FGC38_RS08870 () | 1774334..1774549 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| FGC38_RS23520 () | 1774769..1774939 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| FGC38_RS08875 () | 1775303..1775518 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| FGC38_RS08880 () | 1775819..1776031 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| FGC38_RS08885 () | 1776086..1776175 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| FGC38_RS08890 () | 1776453..1777205 | - | 753 | WP_001047135.1 | antitermination protein | - |
| FGC38_RS08895 () | 1777219..1778268 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| FGC38_RS08900 () | 1778270..1778548 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| FGC38_RS08905 () | 1778615..1778866 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| FGC38_RS08910 () | 1779083..1779238 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| FGC38_RS08915 () | 1779310..1779597 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| FGC38_RS08920 () | 1779597..1779836 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| FGC38_RS08925 () | 1779861..1780166 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| FGC38_RS08930 () | 1780369..1780701 | + | 333 | WP_001301033.1 | protein FlxA | - |
| FGC38_RS08935 () | 1781138..1781287 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| FGC38_RS08940 () | 1781322..1781600 | - | 279 | Protein_1734 | hypothetical protein | - |
| FGC38_RS08945 () | 1781584..1781814 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| FGC38_RS08950 () | 1781898..1782305 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| FGC38_RS08955 () | 1782472..1782627 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| FGC38_RS08960 () | 1782787..1783005 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| FGC38_RS08970 () | 1783573..1783761 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| FGC38_RS08975 () | 1783758..1783949 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| FGC38_RS08980 () | 1784042..1784809 | + | 768 | Protein_1741 | exonuclease | - |
| FGC38_RS08985 () | 1784806..1785501 | + | 696 | Protein_1742 | IS3-like element IS2 family transposase | - |
| FGC38_RS08990 () | 1785515..1786672 | + | 1158 | Protein_1743 | site-specific integrase | - |
| FGC38_RS09000 () | 1786860..1787879 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| FGC38_RS09005 () | 1787891..1789105 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| FGC38_RS09010 () | 1789311..1789637 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| FGC38_RS09015 () | 1789772..1790113 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| FGC38_RS09020 () | 1790148..1790708 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| FGC38_RS09025 () | 1790711..1791421 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| FGC38_RS09030 () | 1791529..1791834 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| FGC38_RS09035 () | 1792033..1794459 | + | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
| FGC38_RS09040 () | 1794520..1796943 | + | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| FGC38_RS09045 () | 1796954..1797571 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| FGC38_RS09050 () | 1797573..1798427 | + | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit | - |
| FGC38_RS09055 () | 1798470..1799084 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| FGC38_RS09060 () | 1799243..1800535 | + | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| FGC38_RS09065 () | 1800488..1801183 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| FGC38_RS09070 () | 1801308..1802528 | - | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0 |