MGE detailed information
MGE type: Prophage MGE length: 20231 bp
Accession: NZ_CP037923 Location: 1317756..1337986 Organism: Shigella flexneri 5a str. M90T Replicon: chromosome
Accession: NZ_CP037923 Location: 1317756..1337986 Organism: Shigella flexneri 5a str. M90T Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EKN05_RS06730 (EKN05_006745) | 1313839..1314480 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| EKN05_RS06735 (EKN05_006750) | 1314536..1315714 | - | 1179 | WP_000173488.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| EKN05_RS06740 (EKN05_006755) | 1315848..1316138 | + | 291 | Protein_1290 | DNA damage-inducible protein YebG | - |
| EKN05_RS06745 (EKN05_006760) | 1316205..1316561 | + | 357 | WP_005062375.1 | protein YebF | - |
| EKN05_RS06750 (EKN05_006765) | 1316888..1317547 | + | 660 | WP_000024752.1 | tellurite resistance TerB family protein | - |
| EKN05_RS06755 (EKN05_006770) | 1317756..1319816 | + | 2061 | WP_000936980.1 | oligopeptidase B | - |
| EKN05_RS06760 (EKN05_006775) | 1319813..1320475 | - | 663 | WP_000944267.1 | exodeoxyribonuclease X | - |
| EKN05_RS06765 (EKN05_006780) | 1320499..1321155 | - | 657 | Protein_1295 | carbon-nitrogen hydrolase family protein YobB | - |
| EKN05_RS06770 (EKN05_006785) | 1321257..1321487 | - | 231 | WP_000916757.1 | DNA polymerase III subunit theta | - |
| EKN05_RS06775 (EKN05_006790) | 1321626..1322000 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EKN05_RS06780 (EKN05_006795) | 1322004..1322876 | + | 873 | WP_000879271.1 | copper homeostasis membrane protein CopD | - |
| EKN05_RS06785 (EKN05_006800) | 1322889..1323230 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1323258..1323492 | - | 235 | - | - | Antitoxin Detail |
| - | 1323388..1323491 | + | 104 | - | - | Toxin Detail |
| EKN05_RS06790 (EKN05_006805) | 1323623..1324699 | - | 1077 | WP_001189100.1 | hypothetical protein ; Integrase | Integrase |
| EKN05_RS06795 (EKN05_006810) | 1324665..1324946 | - | 282 | WP_094096572.1 | excisionase | - |
| EKN05_RS06805 (EKN05_006820) | 1326320..1326508 | - | 189 | WP_000276807.1 | DUF1187 family protein | - |
| EKN05_RS06810 (EKN05_006825) | 1326559..1327656 | - | 1098 | WP_001173296.1 | AAA family ATPase | - |
| EKN05_RS06815 (EKN05_006830) | 1327686..1327958 | - | 273 | WP_001277358.1 | host-nuclease inhibitor Gam family protein | - |
| EKN05_RS25645 (EKN05_006835) | 1327936..1328865 | - | 930 | Protein_1306 | exodeoxyribonuclease VIII | - |
| EKN05_RS06825 (EKN05_006840) | 1328906..1329754 | - | 849 | Protein_1307 | IS3 family transposase IS600 | Transposase |
| EKN05_RS06830 (EKN05_006845) | 1329809..1331018 | + | 1210 | Protein_1308 | IS3 family transposase IS629 | Transposase |
| EKN05_RS06835 (EKN05_006850) | 1331061..1331371 | - | 311 | Protein_1309 | IS3 family transposase ISSfl10 | Transposase |
| EKN05_RS06840 (EKN05_006855) | 1331435..1331902 | + | 468 | Protein_1310 | DNA-binding transcriptional regulator PgrR | - |
| EKN05_RS06845 (EKN05_006860) | 1332239..1333852 | + | 1614 | WP_000682988.1 | murein tripeptide ABC transporter substrate-binding protein MppA | - |
| EKN05_RS06850 (EKN05_006865) | 1333903..1334934 | - | 1032 | WP_000559908.1 | low conductance mechanosensitive channel YnaI | - |
| EKN05_RS06855 (EKN05_006870) | 1335062..1335426 | + | 365 | Protein_1313 | IS3 family transposase IS911 | Transposase |
| EKN05_RS06860 (EKN05_006875) | 1335537..1336724 | - | 1188 | WP_134807731.1 | IS91 family transposase ISEc37 | Transposase |
| EKN05_RS06865 (EKN05_006880) | 1336724..1337089 | - | 366 | WP_134807621.1 | transposase | - |
| EKN05_RS06870 (EKN05_006885) | 1337174..1337986 | + | 813 | Protein_1316 | IS3 family transposase ISLad1 | Transposase |
| EKN05_RS06875 (EKN05_006890) | 1338186..1338443 | + | 258 | Protein_1317 | DUF2534 family protein | - |
| EKN05_RS06880 (EKN05_006895) | 1338493..1339443 | - | 951 | WP_001262123.1 | universal stress protein UspE | - |
| EKN05_RS06885 (EKN05_006900) | 1339595..1340347 | - | 753 | WP_000611911.1 | fumarate/nitrate reduction transcriptional regulator Fnr | - |
| EKN05_RS06890 (EKN05_006905) | 1340542..1341057 | - | 516 | WP_000945011.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| EKN05_RS06895 (EKN05_006910) | 1341068..1341211 | - | 144 | Protein_1321 | AbgT family transporter | - |
| EKN05_RS25650 | 1341211..1341427 | + | 217 | Protein_1322 | LysR family transcriptional regulator | - |
| EKN05_RS06900 (EKN05_006915) | 1341601..1342416 | - | 816 | WP_000156578.1 | helix-turn-helix transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5 str. 8401 | Prophage | TA21654 | NC_008258 | 1876166..1893332 | 0.005 | |
| Shigella flexneri 4c strain 1205 | Prophage | TA56002 | NZ_CP012140 | 1342358..1358805 | 0.006 | |
| Shigella flexneri 4c strain 1602 | Prophage | TA74267 | NZ_CP020336 | 2034691..2053397 | 0.009 | |
| Shigella flexneri 1a strain 0439 | Prophage | TA74315 | NZ_CP020342 | 3062064..3077205 | 0.008 |