MGE detailed information
MGE type: Prophage MGE length: 33462 bp
Accession: NZ_CP034595 Location: 2080640..2114101 Organism: Escherichia coli strain WCHEC035053S1G0 Replicon: chromosome
Accession: NZ_CP034595 Location: 2080640..2114101 Organism: Escherichia coli strain WCHEC035053S1G0 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DK245_RS10145 () | 2076539..2077759 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| DK245_RS10150 () | 2077884..2078579 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| DK245_RS10155 () | 2078532..2079824 | - | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| DK245_RS10160 () | 2079983..2080597 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| DK245_RS10165 () | 2080640..2081494 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit | - |
| DK245_RS10170 () | 2081496..2082113 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| DK245_RS10175 () | 2082124..2084547 | - | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| DK245_RS10180 () | 2084608..2087034 | - | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
| DK245_RS10185 () | 2087233..2087538 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| DK245_RS10190 () | 2087646..2088356 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| DK245_RS10195 () | 2088359..2088919 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| DK245_RS10200 () | 2088954..2089295 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| DK245_RS10205 () | 2089430..2089756 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| DK245_RS10210 () | 2089962..2091176 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| DK245_RS10215 () | 2091188..2092207 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| DK245_RS10225 () | 2092395..2093552 | - | 1158 | Protein_1979 | site-specific integrase | - |
| DK245_RS10230 () | 2093566..2094261 | - | 696 | Protein_1980 | IS3-like element IS2 family transposase | - |
| DK245_RS10235 () | 2094258..2095025 | - | 768 | Protein_1981 | exonuclease | - |
| DK245_RS10240 () | 2095118..2095309 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| DK245_RS10245 () | 2095306..2095494 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| DK245_RS10255 () | 2096062..2096280 | - | 219 | WP_001171942.1 | hypothetical protein | - |
| DK245_RS10260 () | 2096440..2096595 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| DK245_RS10265 () | 2096762..2097169 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| DK245_RS10270 () | 2097253..2097483 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| DK245_RS10275 () | 2097467..2097745 | + | 279 | Protein_1988 | hypothetical protein | - |
| DK245_RS10280 () | 2097780..2097929 | + | 150 | WP_011443592.1 | hypothetical protein | - |
| DK245_RS10285 () | 2098366..2098698 | - | 333 | WP_001301033.1 | protein FlxA | - |
| DK245_RS10290 () | 2098901..2099206 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| DK245_RS10295 () | 2099231..2099470 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| DK245_RS10300 () | 2099470..2099757 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| DK245_RS10305 () | 2099829..2099984 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| DK245_RS10310 () | 2100201..2100452 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| DK245_RS10315 () | 2100519..2100797 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| DK245_RS10320 () | 2100799..2101848 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| DK245_RS10325 () | 2101862..2102614 | + | 753 | WP_001047135.1 | antitermination protein | - |
| DK245_RS10330 () | 2102892..2102981 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| DK245_RS10335 () | 2103036..2103248 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| DK245_RS10340 () | 2103549..2103764 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| DK245_RS23060 () | 2104128..2104298 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| DK245_RS10345 () | 2104518..2104733 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| DK245_RS10350 () | 2104738..2105049 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| DK245_RS10355 () | 2105046..2105579 | + | 534 | WP_001092971.1 | lysozyme | - |
| DK245_RS10360 () | 2105576..2106073 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| DK245_RS10365 () | 2106436..2106648 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| DK245_RS10370 () | 2106659..2106847 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| DK245_RS10375 () | 2106850..2106915 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| DK245_RS10380 () | 2106994..2107149 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| DK245_RS10385 () | 2107321..2107494 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| DK245_RS10390 () | 2107646..2108056 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| DK245_RS10395 () | 2108114..2108347 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| DK245_RS10400 () | 2108736..2109305 | + | 570 | WP_000453588.1 | DNA-packaging protein | - |
| DK245_RS10405 () | 2109256..2110218 | + | 963 | WP_001027733.1 | phage tail protein | - |
| DK245_RS10410 () | 2110218..2110793 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| DK245_RS10415 () | 2110891..2111481 | - | 591 | WP_000078178.1 | recombinase family protein | - |
| DK245_RS10420 () | 2111798..2112031 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| DK245_RS10425 () | 2112100..2112213 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| DK245_RS10430 () | 2112734..2114101 | + | 1368 | Protein_2020 | MHS family MFS transporter | - |
| DK245_RS10435 () | 2114190..2115650 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| DK245_RS10440 () | 2115685..2115888 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| DK245_RS10445 () | 2116065..2116751 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| DK245_RS10450 () | 2116840..2117586 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0 |