MGE detailed information
MGE type: Prophage MGE length: 34795 bp
Accession: NZ_CP030240 Location: 3759929..3794723 Organism: Escherichia coli strain ER1709 Replicon: chromosome
Accession: NZ_CP030240 Location: 3759929..3794723 Organism: Escherichia coli strain ER1709 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQ225_RS18190 () | 3756444..3757190 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| DQ225_RS18195 () | 3757279..3757965 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| DQ225_RS18200 () | 3758142..3758345 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| DQ225_RS18205 () | 3758380..3759840 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| DQ225_RS18210 () | 3759929..3761296 | - | 1368 | Protein_3523 | MHS family MFS transporter | - |
| DQ225_RS18215 () | 3761817..3761930 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| DQ225_RS18220 () | 3761999..3762232 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| DQ225_RS18225 () | 3762549..3763139 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| DQ225_RS18230 () | 3763237..3763812 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| DQ225_RS18235 () | 3763812..3764774 | - | 963 | WP_001027733.1 | phage tail protein | - |
| DQ225_RS18240 () | 3764725..3765294 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| DQ225_RS18245 () | 3765683..3765916 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| DQ225_RS18250 () | 3765974..3766384 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| DQ225_RS18255 () | 3766536..3766708 | - | 173 | Protein_3532 | addiction module toxin, GnsA/GnsB family | - |
| DQ225_RS18260 () | 3766880..3767035 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| DQ225_RS18265 () | 3767114..3767179 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| DQ225_RS18270 () | 3767182..3767370 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| DQ225_RS18275 () | 3767381..3767593 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| DQ225_RS18280 () | 3767956..3768453 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| DQ225_RS18285 () | 3768450..3768983 | - | 534 | WP_001092971.1 | lysozyme | - |
| DQ225_RS18290 () | 3768980..3769291 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| DQ225_RS18295 () | 3769296..3769511 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| DQ225_RS22775 () | 3769731..3769901 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| DQ225_RS18300 () | 3770265..3770480 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| DQ225_RS18305 () | 3770781..3770993 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| DQ225_RS18310 () | 3771048..3771137 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| DQ225_RS18315 () | 3771414..3772166 | - | 753 | WP_001047135.1 | antitermination protein | - |
| DQ225_RS18320 () | 3772180..3773229 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| DQ225_RS18325 () | 3773231..3773509 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| DQ225_RS18330 () | 3773576..3773827 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| DQ225_RS18335 () | 3774044..3774199 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| DQ225_RS18340 () | 3774271..3774558 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| DQ225_RS18345 () | 3774558..3774797 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| DQ225_RS18350 () | 3774822..3775127 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| DQ225_RS18355 () | 3775330..3775662 | + | 333 | WP_001301033.1 | protein FlxA | - |
| DQ225_RS18360 () | 3776099..3776248 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| DQ225_RS18365 () | 3776283..3776561 | - | 279 | Protein_3555 | hypothetical protein | - |
| DQ225_RS18370 () | 3776545..3776775 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| DQ225_RS18375 () | 3776859..3777266 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| DQ225_RS18380 () | 3777433..3777588 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| DQ225_RS18385 () | 3777748..3777966 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| DQ225_RS18395 () | 3778534..3778722 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| DQ225_RS18400 () | 3778719..3778910 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| DQ225_RS18405 () | 3779003..3779770 | + | 768 | Protein_3562 | exonuclease | - |
| DQ225_RS18410 () | 3779767..3780462 | + | 696 | Protein_3563 | IS3 family transposase IS2 | Transposase |
| DQ225_RS18415 () | 3780476..3780781 | + | 306 | Protein_3564 | DUF3596 domain-containing protein | - |
| DQ225_RS18425 () | 3782112..3782969 | + | 858 | Protein_3566 | Putative defective protein IntQ ; Integrase | Integrase |
| DQ225_RS18435 () | 3783157..3784176 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| DQ225_RS18440 () | 3784188..3785402 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| DQ225_RS18445 () | 3785608..3785934 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| DQ225_RS18450 () | 3786069..3786410 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| DQ225_RS18455 () | 3786445..3787005 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| DQ225_RS18460 () | 3787008..3787718 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| DQ225_RS18465 () | 3787826..3788131 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| DQ225_RS18470 () | 3788330..3790755 | + | 2426 | Protein_3574 | dimethyl sulfoxide reductase subunit A | - |
| DQ225_RS18475 () | 3790816..3793239 | + | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| DQ225_RS18480 () | 3793250..3793867 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| DQ225_RS18485 () | 3793869..3794723 | + | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit | - |
| DQ225_RS18490 () | 3794766..3795380 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| DQ225_RS18495 () | 3795539..3796831 | + | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| DQ225_RS18500 () | 3796784..3797479 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| DQ225_RS18505 () | 3797604..3798824 | - | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0 |