MGE detailed information
MGE type: Genomic_island MGE length: 11673 bp
Accession: NZ_CP029492 Location: 600204..611876 Organism: Escherichia coli strain HS30-1 Replicon: chromosome
Accession: NZ_CP029492 Location: 600204..611876 Organism: Escherichia coli strain HS30-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DKQ63_RS03115 () | 595205..595639 | - | 435 | WP_000948824.1 | PTS sugar transporter subunit IIA | - |
| DKQ63_RS03120 () | 595657..596535 | - | 879 | WP_001300474.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| DKQ63_RS03125 () | 596525..597304 | - | 780 | WP_000406214.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| DKQ63_RS03130 () | 597315..597788 | - | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| DKQ63_RS03135 () | 597811..599091 | - | 1281 | WP_000681903.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| DKQ63_RS03145 () | 599340..600149 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| DKQ63_RS03150 () | 600204..600668 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| DKQ63_RS03155 () | 600668..601003 | - | 336 | WP_110991382.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| DKQ63_RS03160 () | 601152..602723 | - | 1572 | WP_001723936.1 | galactarate dehydratase | - |
| DKQ63_RS03165 () | 603098..604432 | + | 1335 | WP_001723935.1 | galactarate/glucarate/glycerate transporter GarP | - |
| DKQ63_RS03170 () | 604448..605218 | + | 771 | WP_001723934.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| DKQ63_RS03175 () | 605248..606138 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| DKQ63_RS03180 () | 606235..607380 | + | 1146 | WP_001424370.1 | glycerate 2-kinase | - |
| DKQ63_RS03190 () | 608403..609590 | - | 1188 | WP_110991383.1 | YhaC family protein | - |
| DKQ63_RS03195 () | 609612..610150 | - | 539 | Protein_577 | hypothetical protein | - |
| DKQ63_RS03200 () | 610406..610624 | - | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| DKQ63_RS03205 () | 610938..611876 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| DKQ63_RS03215 () | 611975..612964 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| DKQ63_RS03220 () | 612986..614317 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| DKQ63_RS03225 () | 614343..615551 | + | 1209 | WP_001295545.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.008 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.008 |