MGE detailed information
MGE type: Prophage MGE length: 33462 bp
Accession: NZ_CP026343 Location: 1631001..1664462 Organism: Escherichia coli strain 9A Replicon: chromosome
Accession: NZ_CP026343 Location: 1631001..1664462 Organism: Escherichia coli strain 9A Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2R20_RS08495 () | 1627516..1628262 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| C2R20_RS08500 () | 1628351..1629037 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| C2R20_RS08505 () | 1629214..1629417 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| C2R20_RS08510 () | 1629452..1630912 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| C2R20_RS08515 () | 1631001..1632368 | - | 1368 | Protein_1551 | MHS family MFS transporter | - |
| C2R20_RS24155 () | 1632889..1633002 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| C2R20_RS08520 () | 1633071..1633304 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| C2R20_RS08525 () | 1633621..1634211 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| C2R20_RS08530 () | 1634309..1634884 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| C2R20_RS08535 () | 1634884..1635846 | - | 963 | WP_001027733.1 | phage tail protein | - |
| C2R20_RS08540 () | 1635797..1636366 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| C2R20_RS08550 () | 1636755..1636988 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| C2R20_RS08555 () | 1637046..1637456 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| C2R20_RS08560 () | 1637608..1637781 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| C2R20_RS08565 () | 1637953..1638108 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| C2R20_RS24160 () | 1638187..1638252 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| C2R20_RS08570 () | 1638255..1638443 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| C2R20_RS08575 () | 1638454..1638666 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| C2R20_RS08580 () | 1639029..1639526 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| C2R20_RS08585 () | 1639523..1640056 | - | 534 | WP_001092971.1 | lysozyme | - |
| C2R20_RS08590 () | 1640053..1640364 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| C2R20_RS08595 () | 1640369..1640584 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| C2R20_RS24440 () | 1640804..1640974 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| C2R20_RS08600 () | 1641338..1641553 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| C2R20_RS08605 () | 1641854..1642066 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| C2R20_RS24165 () | 1642121..1642210 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| C2R20_RS08610 () | 1642488..1643240 | - | 753 | WP_001047135.1 | antitermination protein | - |
| C2R20_RS08615 () | 1643254..1644303 | - | 1050 | WP_001393597.1 | DUF968 domain-containing protein | - |
| C2R20_RS08620 () | 1644305..1644583 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| C2R20_RS08625 () | 1644650..1644901 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| C2R20_RS08630 () | 1645118..1645273 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| C2R20_RS08635 () | 1645345..1645632 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| C2R20_RS08640 () | 1645632..1645871 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| C2R20_RS08645 () | 1645896..1646201 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| C2R20_RS08650 () | 1646404..1646736 | + | 333 | WP_001301033.1 | protein FlxA | - |
| C2R20_RS24170 () | 1647173..1647322 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| C2R20_RS08660 () | 1647357..1647635 | - | 279 | Protein_1583 | hypothetical protein | - |
| C2R20_RS08665 () | 1647619..1647849 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| C2R20_RS08670 () | 1647933..1648340 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| C2R20_RS08675 () | 1648507..1648662 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| C2R20_RS08685 () | 1648822..1649040 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| C2R20_RS08695 () | 1649608..1649796 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| C2R20_RS08700 () | 1649793..1649984 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| C2R20_RS08705 () | 1650077..1650844 | + | 768 | Protein_1590 | exonuclease | - |
| C2R20_RS08710 () | 1650841..1651536 | + | 696 | Protein_1591 | IS3 family transposase IS2 | Transposase |
| C2R20_RS08715 () | 1651550..1652707 | + | 1158 | Protein_1592 | Putative defective protein IntQ ; Integrase | Integrase |
| C2R20_RS08725 () | 1652895..1653914 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| C2R20_RS08730 () | 1653926..1655140 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| C2R20_RS08740 () | 1655346..1655672 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| C2R20_RS08745 () | 1655807..1656148 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| C2R20_RS08750 () | 1656183..1656743 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| C2R20_RS08755 () | 1656746..1657456 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| C2R20_RS08760 () | 1657564..1657869 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| C2R20_RS08765 () | 1658068..1660494 | + | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
| C2R20_RS08770 () | 1660555..1662978 | + | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| C2R20_RS08775 () | 1662989..1663606 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| C2R20_RS08780 () | 1663608..1664462 | + | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit | - |
| C2R20_RS08785 () | 1664505..1665119 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| C2R20_RS08790 () | 1665278..1666570 | + | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| C2R20_RS08795 () | 1666523..1667218 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| C2R20_RS08800 () | 1667343..1668563 | - | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0 |