MGE detailed information
MGE type: Conjugative plasmid MGE length: 184098 bp
Accession: NZ_CP025708 Location: 1..184098 Organism: Escherichia coli strain YDC107 Replicon: plasmid pYDC107_184
Accession: NZ_CP025708 Location: 1..184098 Organism: Escherichia coli strain YDC107 Replicon: plasmid pYDC107_184
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YDC107_RS25365 () | 1..978 | + | 978 | WP_000361612.1 | RepB family plasmid replication initiator protein | - |
| YDC107_RS25370 () | 1263..2003 | - | 741 | WP_001066942.1 | tyrosine-type recombinase/integrase | - |
| YDC107_RS25375 () | 2124..2249 | - | 126 | WP_032156742.1 | hypothetical protein | - |
| YDC107_RS25380 () | 2373..2533 | - | 161 | Protein_3 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| YDC107_RS25385 () | 2649..2956 | - | 308 | Protein_4 | type II toxin-antitoxin system ParD family antitoxin | - |
| YDC107_RS25390 () | 2958..3152 | - | 195 | WP_042012863.1 | hypothetical protein | - |
| YDC107_RS25395 () | 3449..4618 | + | 1170 | WP_001072355.1 | hypothetical protein | - |
| YDC107_RS25400 () | 4651..4779 | + | 129 | Protein_7 | transposase | - |
| YDC107_RS25405 () | 4814..5107 | - | 294 | WP_001105060.1 | hypothetical protein | - |
| YDC107_RS25410 () | 5213..5488 | - | 276 | WP_000421272.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| YDC107_RS25415 () | 5488..5772 | - | 285 | WP_001387467.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| YDC107_RS25420 () | 6377..7129 | + | 753 | WP_000562172.1 | IclR family transcriptional regulator | - |
| YDC107_RS25425 () | 7175..8140 | - | 966 | WP_001022265.1 | 2-keto-3-deoxygluconate transporter | - |
| YDC107_RS25430 () | 8173..8553 | - | 381 | WP_000710783.1 | Rid family detoxifying hydrolase | - |
| YDC107_RS25435 () | 8578..9468 | - | 891 | WP_001077068.1 | dihydrodipicolinate synthase family protein | - |
| YDC107_RS25440 () | 9701..9895 | - | 195 | WP_000796505.1 | hypothetical protein | - |
| YDC107_RS25445 () | 9869..10309 | + | 441 | Protein_16 | zinc-binding dehydrogenase | - |
| YDC107_RS25450 () | 10452..11318 | + | 867 | WP_001403365.1 | sugar ABC transporter permease | - |
| YDC107_RS25455 () | 11308..12195 | + | 888 | WP_001271561.1 | carbohydrate ABC transporter permease | - |
| YDC107_RS25460 () | 12206..13030 | + | 825 | WP_000922702.1 | phosphodiesterase | - |
| YDC107_RS25465 () | 13036..14109 | + | 1074 | WP_000950177.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | VF |
| YDC107_RS25470 () | 14102..15412 | + | 1311 | WP_000476108.1 | ABC transporter substrate-binding protein | - |
| YDC107_RS25475 () | 15471..15779 | - | 309 | Protein_22 | IS4 family transposase ISEc13 | Transposase |
| YDC107_RS25480 () | 15856..16089 | - | 234 | Protein_23 | Tn3 family transposase ISPsy39 | Transposase |
| YDC107_RS25485 () | 16111..17307 | - | 1197 | Protein_24 | IS3 family transposase | - |
| YDC107_RS25490 () | 17332..18036 | + | 705 | WP_001067834.1 | IS6 family transposase IS26 | Transposase |
| YDC107_RS25495 () | 18094..18624 | - | 531 | Protein_26 | histidine-type phosphatase | - |
| YDC107_RS25500 () | 18746..19231 | - | 486 | WP_000874189.1 | hypothetical protein | - |
| YDC107_RS25505 () | 19256..19741 | - | 486 | WP_001267177.1 | TlpA family protein disulfide reductase | - |
| YDC107_RS25510 () | 19728..20423 | - | 696 | WP_000117262.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| YDC107_RS25515 () | 20428..21558 | - | 1131 | WP_000729220.1 | ABC transporter permease | - |
| YDC107_RS25520 () | 21548..22831 | - | 1284 | WP_000964653.1 | ABC transporter permease | - |
| YDC107_RS25525 () | 22834..24213 | - | 1380 | WP_000119836.1 | DUF2318 domain-containing protein | - |
| YDC107_RS25530 () | 24317..24844 | - | 528 | WP_000178050.1 | iron transporter | - |
| YDC107_RS25535 () | 24885..26771 | - | 1887 | WP_000118029.1 | FTR1 family iron permease | - |
| YDC107_RS25540 () | 26774..26959 | - | 186 | WP_071528361.1 | hypothetical protein | - |
| YDC107_RS25545 () | 27118..27933 | - | 816 | WP_012372823.1 | Na(+)-translocating NADH-quinone reductase subunit C | - |
| YDC107_RS25550 () | 28116..28622 | - | 507 | WP_000949452.1 | protein disulfide oxidoreductase | - |
| YDC107_RS25555 () | 28612..28770 | - | 159 | WP_000449408.1 | DsbA family protein | - |
| YDC107_RS25560 () | 28792..28974 | + | 183 | WP_001323225.1 | hypothetical protein | - |
| YDC107_RS25565 () | 29017..29178 | + | 162 | Protein_40 | lipopolysaccharide core heptose(II) kinase RfaY | - |
| YDC107_RS25570 () | 29233..29930 | + | 698 | Protein_41 | IS1 family transposase IS1X2 | Transposase |
| YDC107_RS25575 () | 29945..31108 | + | 1164 | Protein_42 | IS4 family transposase IS10R | Transposase |
| YDC107_RS25580 () | 31124..31534 | - | 411 | Protein_43 | Transposon Tn10 TetD protein | VF |
| YDC107_RS25585 () | 31622..32215 | + | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| YDC107_RS25590 () | 32328..33533 | - | 1206 | WP_001089068.1 | Tetracycline resistance protein, class B | ARG |
| YDC107_RS25595 () | 33612..34238 | + | 627 | WP_001322387.1 | Tetracycline repressor protein class B from transposon Tn10 | VF |
| YDC107_RS25600 () | 34216..34902 | - | 687 | WP_001284954.1 | winged helix-turn-helix domain-containing protein | - |
| YDC107_RS25605 () | 34910..35296 | - | 387 | WP_000460651.1 | hypothetical protein | - |
| YDC107_RS25610 () | 35289..35552 | - | 264 | WP_049802299.1 | antibiotic biosynthesis monooxygenase | - |
| YDC107_RS25615 () | 35549..36246 | - | 698 | Protein_50 | IS1 family transposase IS1R | Transposase |
| YDC107_RS25620 () | 36299..36634 | + | 336 | Protein_51 | dihydrofolate reductase | - |
| YDC107_RS25625 () | 36765..37553 | + | 789 | WP_000503573.1 | Streptomycin 3''-adenylyltransferase | ARG |
| YDC107_RS25630 () | 37759..38106 | + | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| YDC107_RS25635 () | 38100..38939 | + | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| YDC107_RS25640 () | 38869..39048 | - | 180 | WP_001993321.1 | hypothetical protein | - |
| YDC107_RS25645 () | 39067..39270 | + | 204 | WP_000376616.1 | hypothetical protein | - |
| YDC107_RS25650 () | 39426..40631 | + | 1206 | WP_000184001.1 | chromate efflux transporter | - |
| YDC107_RS25655 () | 40642..40947 | + | 306 | WP_000130000.1 | hypothetical protein | Relaxase |
| YDC107_RS25660 () | 40963..41145 | - | 183 | WP_024143553.1 | hypothetical protein | - |
| YDC107_RS25665 () | 41174..41938 | + | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| YDC107_RS25670 () | 41910..41999 | - | 90 | Protein_61 | type VII secretion-associated protein | - |
| YDC107_RS25675 () | 42129..42485 | - | 357 | WP_001336397.1 | hypothetical protein | - |
| YDC107_RS25680 () | 42431..43015 | - | 585 | WP_001137892.1 | TetR family transcriptional regulator | - |
| YDC107_RS25685 () | 43015..44253 | - | 1239 | WP_000004159.1 | MFS transporter | - |
| YDC107_RS25690 () | 44250..45155 | - | 906 | WP_000219391.1 | hypothetical protein | ARG |
| YDC107_RS25695 () | 45218..45331 | + | 114 | Protein_66 | adenine-specific DNA-methyltransferase | - |
| YDC107_RS25700 () | 45277..45981 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| YDC107_RS25705 () | 46116..46211 | + | 96 | WP_013362819.1 | 23S rRNA methyltransferase attenuation leader peptide | - |
| YDC107_RS25710 () | 46337..47074 | + | 738 | WP_013362818.1 | rRNA adenine N-6-methyltransferase | ARG |
| YDC107_RS25715 () | 47079..47189 | + | 111 | WP_100249774.1 | hypothetical protein | - |
| YDC107_RS25720 () | 47704..48153 | + | 450 | WP_013362817.1 | hypothetical protein | - |
| YDC107_RS25725 () | 48306..48455 | + | 150 | Protein_72 | 60 kDa chaperonin 2 | VF |
| YDC107_RS25730 () | 48682..50214 | + | 1533 | WP_013362816.1 | IS91 family transposase ISVsa3 | Transposase |
| YDC107_RS25735 () | 50306..50458 | - | 153 | Protein_74 | LysR family transcriptional regulator | - |
| YDC107_RS25740 () | 50537..51241 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| YDC107_RS25745 () | 51278..52405 | - | 1128 | WP_014837927.1 | DUF3883 domain-containing protein | - |
| YDC107_RS25750 () | 52456..52701 | - | 246 | WP_001330846.1 | hypothetical protein | - |
| YDC107_RS25755 () | 52707..52898 | + | 192 | WP_000951934.1 | hypothetical protein | - |
| YDC107_RS25760 () | 53380..53922 | - | 543 | WP_000587837.1 | AAA family ATPase | - |
| YDC107_RS25765 () | 53935..54795 | - | 861 | WP_000557454.1 | SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| YDC107_RS25770 () | 54831..54998 | + | 168 | Protein_81 | lipopolysaccharide core heptose(II) kinase RfaY | - |
| YDC107_RS25775 () | 54938..55144 | + | 207 | Protein_82 | IS4 family transposase | - |
| YDC107_RS25780 () | 55208..55912 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| YDC107_RS25785 () | 55965..56351 | + | 387 | Protein_84 | Tn3 family transposase TnpR_Tn3 | Transposase |
| YDC107_RS25790 () | 56534..57394 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| YDC107_RS25795 () | 57542..57706 | - | 165 | Protein_86 | mobilization protein (MobL-like) | - |
| YDC107_RS25800 () | 57625..58461 | - | 837 | WP_000480972.1 | hypothetical protein | ARG |
| YDC107_RS25805 () | 58461..59264 | - | 804 | WP_001082320.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| YDC107_RS25810 () | 59325..60140 | - | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| YDC107_RS25815 () | 60164..60241 | + | 78 | Protein_90 | transcriptional regulator | - |
| YDC107_RS25820 () | 60470..60646 | + | 177 | WP_000954592.1 | Arm DNA-binding domain-containing protein | - |
| YDC107_RS25825 () | 60828..61832 | - | 1005 | WP_000427619.1 | IS110 family transposase IS5075 | Transposase |
| YDC107_RS25830 () | 61911..64877 | - | 2967 | WP_001138070.1 | Tn3 family transposase TnpA_ISPa38 | Transposase |
| YDC107_RS25835 () | 64880..65194 | - | 315 | Protein_94 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| YDC107_RS25840 () | 65177..65302 | + | 126 | Protein_95 | 5,10-methylenetetrahydrofolate reductase | - |
| YDC107_RS25845 () | 65248..65952 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| YDC107_RS25850 () | 66022..66495 | - | 474 | WP_004201280.1 | Dihydrofolate reductase type 1 | ARG |
| YDC107_RS25855 () | 66651..67664 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| YDC107_RS25860 () | 67633..67917 | + | 285 | WP_015344971.1 | hypothetical protein | - |
| YDC107_RS25865 () | 68112..68816 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| YDC107_RS25870 () | 68882..70396 | + | 1515 | Protein_101 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| YDC107_RS25875 () | 70611..72383 | - | 1773 | WP_001262767.1 | DUF262 domain-containing protein | - |
| YDC107_RS25880 () | 72668..73000 | - | 333 | WP_000439434.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| YDC107_RS25885 () | 73002..73259 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | Antitoxin Detail |
| YDC107_RS25890 () | 73352..74005 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| YDC107_RS25895 () | 74195..74581 | - | 387 | WP_012311408.1 | hypothetical protein | - |
| YDC107_RS25900 () | 74944..75801 | - | 858 | WP_000130948.1 | incFII family plasmid replication initiator RepA | - |
| YDC107_RS25905 () | 75794..75868 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| YDC107_RS25910 () | 75952..76068 | + | 117 | WP_074446712.1 | replication protein RepA | - |
| YDC107_RS25915 () | 76104..76361 | - | 258 | WP_000083821.1 | replication regulatory protein RepA | - |
| YDC107_RS25920 () | 76328..76579 | + | 252 | WP_071529016.1 | hypothetical protein | - |
| YDC107_RS25925 () | 76766..77788 | + | 1023 | WP_000156883.1 | IS110 family transposase ISSm1 | Transposase |
| YDC107_RS25930 () | 78260..78613 | + | 354 | WP_000005489.1 | hypothetical protein | - |
| YDC107_RS25935 () | 79026..79604 | - | 579 | WP_032147503.1 | DUF2726 domain-containing protein | - |
| YDC107_RS25940 () | 79637..80330 | + | 694 | Protein_115 | IS1 family transposase IS1A | Transposase |
| YDC107_RS25945 () | 80439..80801 | + | 363 | WP_059330006.1 | IS66 family insertion sequence hypothetical protein | - |
| YDC107_RS25950 () | 80798..81148 | + | 351 | WP_000624725.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| YDC107_RS25955 () | 81179..81400 | + | 222 | WP_000080217.1 | hypothetical protein | - |
| YDC107_RS25960 () | 81352..81693 | + | 342 | Protein_119 | IS66 family transposase | - |
| YDC107_RS25965 () | 81757..82236 | - | 480 | WP_001496175.1 | ArgR family transcriptional regulator | - |
| YDC107_RS25970 () | 82317..83720 | - | 1404 | WP_000514417.1 | YfcC family protein | - |
| YDC107_RS25975 () | 83768..84772 | - | 1005 | WP_000154544.1 | Ornithine carbamoyltransferase | VF |
| YDC107_RS25980 () | 84857..85768 | - | 912 | WP_000440183.1 | carbamate kinase | - |
| YDC107_RS25985 () | 85779..86999 | - | 1221 | WP_000410951.1 | arginine deiminase | - |
| YDC107_RS25990 () | 87892..88374 | + | 483 | Protein_125 | hypothetical protein | - |
| YDC107_RS25995 () | 88320..88766 | - | 447 | Protein_126 | incFII family plasmid replication initiator RepA | - |
| YDC107_RS26000 () | 88759..88833 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| YDC107_RS26005 () | 88917..89033 | + | 117 | WP_071586949.1 | replication protein RepA | - |
| YDC107_RS26010 () | 89069..89326 | - | 258 | WP_000083833.1 | replication regulatory protein RepA | - |
| YDC107_RS26015 () | 89610..89759 | - | 150 | WP_001312851.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 89803..89864 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 89803..89864 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 89803..89864 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 89803..89864 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| YDC107_RS26020 () | 89815..90057 | + | 243 | WP_023149666.1 | hypothetical protein | - |
| YDC107_RS26025 () | 90003..90236 | - | 234 | WP_072142979.1 | hypothetical protein | - |
| YDC107_RS26030 () | 90286..90988 | + | 703 | Protein_133 | IS1 family transposase IS1S | Transposase |
| YDC107_RS26035 () | 90982..91104 | - | 123 | WP_001496308.1 | hypothetical protein | - |
| YDC107_RS26040 () | 91289..91501 | - | 213 | WP_005012601.1 | hypothetical protein | - |
| YDC107_RS26045 () | 91634..92194 | - | 561 | WP_000139363.1 | fertility inhibition protein FinO | - |
| YDC107_RS26050 () | 92249..92995 | - | 747 | WP_000205701.1 | conjugal transfer pilus acetylase TraX | - |
| YDC107_RS26055 () | 93015..98285 | - | 5271 | WP_001553822.1 | Multifunctional conjugation protein TraI | Relaxase |
| YDC107_RS26060 () | 98285..100465 | - | 2181 | WP_001553824.1 | type IV conjugative transfer system coupling protein TraD | - |
| YDC107_RS26065 () | 100575..100790 | + | 216 | WP_077824878.1 | hypothetical protein | - |
| YDC107_RS26070 () | 100717..101448 | - | 732 | WP_000850424.1 | complement resistance protein TraT | - |
| YDC107_RS26075 () | 101517..101972 | - | 456 | WP_001553825.1 | conjugal transfer entry exclusion protein TraS | - |
| YDC107_RS26080 () | 101969..104794 | - | 2826 | WP_001553826.1 | conjugal transfer mating pair stabilization protein TraG | - |
| YDC107_RS26085 () | 104791..106167 | - | 1377 | WP_012372805.1 | conjugal transfer protein TraH | - |
| YDC107_RS26090 () | 106151..106543 | - | 393 | WP_001553828.1 | F-type conjugal transfer protein TrbF | - |
| YDC107_RS26095 () | 106497..106870 | - | 374 | Protein_146 | P-type conjugative transfer protein TrbJ | - |
| YDC107_RS26100 () | 106800..107354 | - | 555 | WP_001553830.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| YDC107_RS26105 () | 107341..107625 | - | 285 | WP_000624105.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| YDC107_RS26110 () | 107706..108041 | + | 336 | WP_000415571.1 | hypothetical protein | - |
| YDC107_RS26115 () | 108022..108363 | - | 342 | WP_000556794.1 | conjugal transfer protein TrbA | - |
| YDC107_RS26120 () | 108377..109120 | - | 744 | WP_001030378.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| YDC107_RS26125 () | 109113..109370 | - | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| YDC107_RS26130 () | 109397..111205 | - | 1809 | WP_001553831.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| YDC107_RS26135 () | 111202..111840 | - | 639 | WP_001553832.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| YDC107_RS26140 () | 111849..112841 | - | 993 | WP_001553833.1 | conjugal transfer pilus assembly protein TraU | - |
| YDC107_RS26145 () | 112838..113470 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| YDC107_RS26150 () | 113467..113853 | - | 387 | WP_000099690.1 | type-F conjugative transfer system protein TrbI | - |
| YDC107_RS26155 () | 113850..116477 | - | 2628 | WP_001064264.1 | type IV secretion system protein TraC | - |
| YDC107_RS26160 () | 116637..116858 | - | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| YDC107_RS26165 () | 116993..117508 | - | 516 | WP_000809832.1 | type IV conjugative transfer system lipoprotein TraV | - |
| YDC107_RS26170 () | 117505..117756 | - | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| YDC107_RS26175 () | 117749..117910 | - | 162 | WP_000741714.1 | conjugal transfer protein TrbD | - |
| YDC107_RS26180 () | 117932..118069 | - | 138 | WP_001553834.1 | conjugal transfer protein TrbD | - |
| YDC107_RS26185 () | 118056..118646 | - | 591 | WP_000002787.1 | conjugal transfer protein TraP | - |
| YDC107_RS26190 () | 118636..120063 | - | 1428 | WP_001553836.1 | conjugal transfer protein TraB | - |
| YDC107_RS26195 () | 120063..120734 | - | 672 | WP_001442571.1 | type-F conjugative transfer system secretin TraK | - |
| YDC107_RS26200 () | 120778..121344 | - | 567 | WP_000399790.1 | type IV conjugative transfer system protein TraE | - |
| YDC107_RS26205 () | 121366..121677 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| YDC107_RS26210 () | 121692..122057 | - | 366 | WP_000340282.1 | type IV conjugative transfer system pilin TraA | - |
| YDC107_RS26215 () | 122100..122315 | - | 216 | WP_001352842.1 | conjugal transfer relaxosome protein TraY | - |
| YDC107_RS26220 () | 122451..123098 | - | 648 | WP_000332520.1 | conjugal transfer transcriptional regulator TraJ | - |
| YDC107_RS26225 () | 123289..123672 | - | 384 | WP_001063020.1 | relaxosome protein TraM | - |
| YDC107_RS26230 () | 124012..124614 | + | 603 | WP_077634248.1 | hypothetical protein | VF |
| YDC107_RS26235 () | 124910..125731 | - | 822 | WP_001234465.1 | DUF945 domain-containing protein | - |
| YDC107_RS26240 () | 125850..126137 | - | 288 | WP_000107242.1 | hypothetical protein | - |
| YDC107_RS26245 () | 126201..126798 | + | 598 | Protein_176 | hypothetical protein | - |
| YDC107_RS26250 () | 127036..127194 | - | 159 | WP_001302184.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 127259..127457 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
| - () | 127259..127457 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
| - () | 127259..127457 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
| - () | 127259..127457 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
| YDC107_RS26255 () | 127426..127531 | - | 106 | Protein_178 | plasmid SOS inhibition protein A | - |
| YDC107_RS26260 () | 127686..128003 | + | 318 | Protein_179 | IS110 family transposase | - |
| YDC107_RS26265 () | 128292..128543 | - | 252 | Protein_180 | iron-containing alcohol dehydrogenase | - |
| YDC107_RS26270 () | 128628..129251 | - | 624 | WP_000912556.1 | potassium channel family protein | - |
| YDC107_RS26275 () | 129267..129960 | - | 694 | Protein_182 | IS1 family transposase IS1A | Transposase |
| YDC107_RS26280 () | 130017..130121 | + | 105 | Protein_183 | thiosulfate reductase cytochrome B subunit | - |
| YDC107_RS26285 () | 130188..130367 | - | 180 | WP_001553840.1 | hypothetical protein | - |
| YDC107_RS26290 () | 130367..131761 | - | 1395 | WP_001037799.1 | carbohydrate porin | - |
| YDC107_RS26295 () | 131956..133386 | - | 1431 | WP_000813680.1 | glycoside hydrolase family 32 protein | - |
| YDC107_RS26300 () | 133386..134663 | - | 1278 | WP_001083369.1 | MFS transporter | - |
| YDC107_RS26305 () | 134726..136852 | - | 2127 | WP_000253905.1 | alpha-galactosidase | - |
| YDC107_RS26310 () | 136948..137958 | - | 1011 | WP_000053332.1 | substrate-binding domain-containing protein | - |
| YDC107_RS26315 () | 138116..138874 | - | 759 | Protein_190 | site-specific integrase | - |
| YDC107_RS26320 () | 138920..140193 | + | 1274 | WP_087523611.1 | IS3 family transposase IS2 | Transposase |
| YDC107_RS26325 () | 140178..140747 | + | 570 | WP_123863258.1 | hypothetical protein | - |
| YDC107_RS26330 () | 141215..141352 | - | 138 | WP_042065422.1 | hypothetical protein | - |
| YDC107_RS26335 () | 141272..141500 | + | 229 | Protein_194 | hypothetical protein | - |
| YDC107_RS26340 () | 141435..141628 | - | 194 | Protein_195 | hypothetical protein | - |
| YDC107_RS26345 () | 141848..142102 | - | 255 | WP_047605447.1 | hypothetical protein | - |
| YDC107_RS26350 () | 142128..142691 | - | 564 | WP_001348621.1 | class I SAM-dependent methyltransferase | - |
| YDC107_RS26355 () | 142739..144100 | - | 1362 | WP_000170714.1 | DUF3560 domain-containing protein | - |
| YDC107_RS26360 () | 144152..144382 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| YDC107_RS26365 () | 144643..145065 | + | 423 | WP_001348620.1 | hypothetical protein | - |
| YDC107_RS26370 () | 145218..145484 | - | 267 | WP_032215822.1 | hypothetical protein | - |
| YDC107_RS26375 () | 145417..145608 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| YDC107_RS26380 () | 145605..146027 | - | 423 | WP_000271753.1 | DUF1380 family protein | - |
| YDC107_RS26385 () | 146074..146376 | - | 303 | WP_001671341.1 | antirestriction protein | - |
| YDC107_RS26390 () | 146472..147043 | - | 572 | Protein_205 | DUF1472 domain-containing protein | - |
| YDC107_RS26395 () | 146928..147692 | - | 765 | Protein_206 | hypothetical protein | - |
| YDC107_RS26400 () | 147743..148177 | - | 435 | WP_000274437.1 | DUF1380 family protein | - |
| YDC107_RS26405 () | 148191..148412 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| YDC107_RS26410 () | 148413..149096 | - | 684 | WP_000086185.1 | DNA methylase | - |
| YDC107_RS26415 () | 149173..149477 | - | 305 | Protein_210 | hypothetical protein | - |
| YDC107_RS26420 () | 149481..150383 | - | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| YDC107_RS26425 () | 150421..150693 | - | 273 | WP_001349526.1 | hypothetical protein | - |
| YDC107_RS26430 () | 150731..151168 | - | 438 | Protein_213 | hypothetical protein | - |
| YDC107_RS26435 () | 151250..152221 | - | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| YDC107_RS26440 () | 152221..153387 | - | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| YDC107_RS26445 () | 153975..154730 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| YDC107_RS26450 () | 155504..156310 | - | 807 | WP_000016982.1 | site-specific integrase | - |
| YDC107_RS26455 () | 156311..156616 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| YDC107_RS26460 () | 156618..156836 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| YDC107_RS26465 () | 157470..157667 | + | 198 | WP_000215657.1 | hypothetical protein | - |
| YDC107_RS26470 () | 157664..157948 | - | 285 | WP_000642771.1 | hypothetical protein | - |
| YDC107_RS26475 () | 157968..159101 | - | 1134 | WP_000545983.1 | DUF3800 domain-containing protein | - |
| YDC107_RS26480 () | 159364..162483 | - | 3120 | WP_001553851.1 | hypothetical protein | - |
| YDC107_RS26485 () | 162675..162812 | + | 138 | WP_077248527.1 | toxin-antitoxin system, antitoxin component, AbrB family protein | - |
| YDC107_RS26490 () | 162790..163020 | + | 231 | WP_001261287.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| YDC107_RS26495 () | 163017..163433 | + | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| YDC107_RS26500 () | 163595..165733 | - | 2139 | WP_000350635.1 | AAA family ATPase | - |
| YDC107_RS26505 () | 166198..167193 | + | 996 | WP_000246636.1 | hypothetical protein | - |
| YDC107_RS26510 () | 167197..168129 | + | 933 | WP_000991832.1 | hypothetical protein | - |
| YDC107_RS26515 () | 168266..168963 | - | 698 | Protein_230 | IS1 family transposase IS1G | Transposase |
| YDC107_RS26520 () | 169177..172293 | - | 3117 | WP_001553854.1 | HsdR family type I site-specific deoxyribonuclease | - |
| YDC107_RS26525 () | 172415..173659 | - | 1245 | WP_105955882.1 | restriction endonuclease subunit S | - |
| YDC107_RS26530 () | 173656..175212 | - | 1557 | WP_001553856.1 | type I restriction-modification system subunit M | - |
| YDC107_RS26535 () | 175395..175616 | + | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| YDC107_RS26540 () | 175616..175996 | + | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| YDC107_RS26545 () | 176001..176180 | + | 180 | WP_001513661.1 | hypothetical protein | - |
| YDC107_RS26550 () | 176208..176567 | + | 360 | WP_001513660.1 | hypothetical protein | - |
| YDC107_RS26555 () | 176491..176904 | + | 414 | Protein_238 | IS3 family transposase ISLad1 | Transposase |
| YDC107_RS26560 () | 176854..177171 | - | 318 | WP_001513659.1 | hypothetical protein | - |
| YDC107_RS26565 () | 177399..178415 | - | 1017 | WP_012372828.1 | IS5 family transposase IS5D | Transposase |
| YDC107_RS26570 () | 178623..180026 | + | 1404 | WP_001373486.1 | S-methylmethionine permease | - |
| YDC107_RS26575 () | 180013..180945 | + | 933 | WP_000081352.1 | homocysteine S-methyltransferase | - |
| YDC107_RS26580 () | 181054..181383 | - | 330 | Protein_243 | TOBE domain-containing protein | - |
| YDC107_RS26585 () | 181399..182096 | - | 698 | Protein_244 | IS1 family transposase IS1R | Transposase |
| YDC107_RS26590 () | 182503..183313 | - | 811 | Protein_245 | DUF3800 domain-containing protein | - |
| YDC107_RS26595 () | 183553..183786 | - | 234 | WP_023142190.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|