MGE detailed information
MGE type: Prophage MGE length: 33461 bp
Accession: NZ_CP025268 Location: 1635821..1669281 Organism: Escherichia coli str. K-12 substr. MG1655 strain K-12 Replicon: chromosome
Accession: NZ_CP025268 Location: 1635821..1669281 Organism: Escherichia coli str. K-12 substr. MG1655 strain K-12 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CXP41_RS08560 () | 1632336..1633082 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| CXP41_RS08565 () | 1633171..1633857 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| CXP41_RS08570 () | 1634034..1634237 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| CXP41_RS08575 () | 1634272..1635732 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| CXP41_RS08580 () | 1635821..1637188 | - | 1368 | Protein_1569 | MHS family MFS transporter | - |
| CXP41_RS24195 () | 1637709..1637822 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| CXP41_RS08585 () | 1637891..1638124 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| CXP41_RS08590 () | 1638441..1639031 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| CXP41_RS08595 () | 1639129..1639704 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| CXP41_RS08600 () | 1639704..1640666 | - | 963 | WP_001027733.1 | phage tail protein | - |
| CXP41_RS08605 () | 1640617..1641186 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| CXP41_RS08615 () | 1641575..1641808 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| CXP41_RS08620 () | 1641866..1642276 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| CXP41_RS08625 () | 1642428..1642601 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| CXP41_RS08630 () | 1642773..1642928 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| CXP41_RS24200 () | 1643007..1643072 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| CXP41_RS08635 () | 1643075..1643263 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| CXP41_RS08640 () | 1643274..1643486 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| CXP41_RS08645 () | 1643849..1644346 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| CXP41_RS08650 () | 1644343..1644876 | - | 534 | WP_001092971.1 | lysozyme | - |
| CXP41_RS08655 () | 1644873..1645184 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| CXP41_RS08660 () | 1645189..1645404 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| CXP41_RS24470 () | 1645624..1645794 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| CXP41_RS08665 () | 1646158..1646373 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| CXP41_RS08670 () | 1646674..1646886 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| CXP41_RS24205 () | 1646941..1647030 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| CXP41_RS08675 () | 1647308..1648060 | - | 753 | WP_001047135.1 | antitermination protein | - |
| CXP41_RS08680 () | 1648074..1649123 | - | 1050 | WP_001393597.1 | DUF968 domain-containing protein | - |
| CXP41_RS08685 () | 1649125..1649403 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| CXP41_RS08690 () | 1649470..1649721 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| CXP41_RS08695 () | 1649938..1650093 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| CXP41_RS08700 () | 1650165..1650452 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| CXP41_RS08705 () | 1650452..1650691 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| CXP41_RS08710 () | 1650716..1651021 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| CXP41_RS08715 () | 1651224..1651556 | + | 333 | WP_001301033.1 | protein FlxA | - |
| CXP41_RS24210 () | 1651993..1652142 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| CXP41_RS08725 () | 1652177..1652455 | - | 279 | Protein_1601 | hypothetical protein | - |
| CXP41_RS08730 () | 1652439..1652669 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| CXP41_RS08735 () | 1652753..1653160 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| CXP41_RS08740 () | 1653327..1653482 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| CXP41_RS08750 () | 1653642..1653860 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| CXP41_RS08760 () | 1654428..1654616 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| CXP41_RS08765 () | 1654613..1654804 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| CXP41_RS08770 () | 1654897..1655664 | + | 768 | Protein_1608 | exonuclease | - |
| CXP41_RS08775 () | 1655661..1656356 | + | 696 | Protein_1609 | IS3 family transposase IS2 | Transposase |
| CXP41_RS08780 () | 1656370..1657527 | + | 1158 | Protein_1610 | Putative defective protein IntQ ; Integrase | Integrase |
| CXP41_RS08790 () | 1657715..1658734 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| CXP41_RS08795 () | 1658746..1659960 | - | 1215 | WP_101348598.1 | starvation-sensing protein RspA | - |
| CXP41_RS08805 () | 1660141..1660491 | - | 351 | WP_101348599.1 | YnfA family protein | - |
| CXP41_RS08810 () | 1660626..1660967 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| CXP41_RS08815 () | 1661002..1661562 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| CXP41_RS08820 () | 1661565..1662275 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| CXP41_RS08825 () | 1662383..1662688 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| CXP41_RS08830 () | 1662887..1665313 | + | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
| CXP41_RS08835 () | 1665374..1667797 | + | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| CXP41_RS08840 () | 1667808..1668425 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| CXP41_RS08845 () | 1668427..1669281 | + | 855 | WP_101348600.1 | dimethyl sulfoxide reductase anchor subunit | - |
| CXP41_RS08850 () | 1669324..1669938 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| CXP41_RS08855 () | 1670097..1671389 | + | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| CXP41_RS08860 () | 1671342..1672037 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| CXP41_RS08865 () | 1672162..1673382 | - | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.001 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0 |