MGE detailed information
MGE type: Genomic_island MGE length: 9947 bp
Accession: NZ_CP023383 Location: 4057195..4067141 Organism: Escherichia coli strain 1223 Replicon: chromosome
Accession: NZ_CP023383 Location: 4057195..4067141 Organism: Escherichia coli strain 1223 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CNQ49_RS20945 () | 4053028..4054359 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| CNQ49_RS20950 () | 4054381..4055370 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| CNQ49_RS20955 () | 4055469..4056407 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| CNQ49_RS20960 () | 4056721..4056939 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| CNQ49_RS20965 () | 4057195..4057733 | + | 539 | Protein_3828 | hypothetical protein | - |
| CNQ49_RS20970 () | 4057755..4058942 | + | 1188 | WP_049253626.1 | YhaC family protein | - |
| CNQ49_RS20980 () | 4059965..4061110 | - | 1146 | WP_001424370.1 | glycerate 2-kinase | - |
| CNQ49_RS20985 () | 4061207..4062097 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| CNQ49_RS20990 () | 4062127..4062897 | - | 771 | WP_001723934.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| CNQ49_RS20995 () | 4062913..4064247 | - | 1335 | WP_001723935.1 | galactarate/glucarate/glycerate transporter GarP | - |
| CNQ49_RS21000 () | 4064622..4066193 | + | 1572 | WP_001723936.1 | galactarate dehydratase | - |
| CNQ49_RS21005 () | 4066342..4066677 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| CNQ49_RS21010 () | 4066677..4067141 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| CNQ49_RS21015 () | 4067196..4068005 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| CNQ49_RS21025 () | 4068254..4069534 | + | 1281 | WP_000681903.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| CNQ49_RS21030 () | 4069557..4070030 | + | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| CNQ49_RS21035 () | 4070041..4070820 | + | 780 | WP_000406214.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| CNQ49_RS21040 () | 4070810..4071688 | + | 879 | WP_001300474.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| CNQ49_RS21045 () | 4071706..4072140 | + | 435 | WP_000948824.1 | PTS sugar transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.009 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.009 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.009 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.01 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.009 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.009 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.01 |