MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 148316 bp
Accession: NZ_CP021660 Location: 1..148316 Organism: Candidatus Fukatsuia symbiotica strain 5D Replicon: plasmid p5D_Fsymbiotica-1
Accession: NZ_CP021660 Location: 1..148316 Organism: Candidatus Fukatsuia symbiotica strain 5D Replicon: plasmid p5D_Fsymbiotica-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCS41_RS13760 () | 884..1081 | + | 198 | WP_119797779.1 | hypothetical protein | - |
| CCS41_RS13765 () | 1505..2527 | + | 1023 | WP_119797780.1 | IS630 family transposase ISVa15 | Transposase |
| CCS41_RS13770 () | 2521..3182 | + | 662 | Protein_3 | IS5 family transposase | - |
| CCS41_RS13775 () | 3332..3733 | + | 402 | WP_119797781.1 | IS630 family transposase ISSpu23 | Transposase |
| CCS41_RS13780 () | 4151..4582 | - | 432 | WP_119797021.1 | IS200-IS605 family transposase ISAzo20 | Transposase |
| CCS41_RS13785 () | 6015..6950 | + | 936 | WP_119797782.1 | replication initiator protein A | - |
| CCS41_RS13790 () | 7020..7370 | + | 351 | WP_119797783.1 | hypothetical protein | - |
| CCS41_RS15775 () | 7382..7537 | + | 156 | WP_162860107.1 | hypothetical protein | - |
| CCS41_RS13795 () | 7713..7988 | + | 276 | WP_162860108.1 | TraY domain-containing protein | - |
| CCS41_RS13805 () | 8124..8489 | + | 366 | WP_119797785.1 | IS4 family transposase ISWosp2 | Transposase |
| CCS41_RS13810 () | 8486..9025 | + | 540 | WP_119797786.1 | IS4 family transposase ISLpn5 | Transposase |
| CCS41_RS13815 () | 8988..9629 | + | 642 | WP_119797787.1 | IS4 family transposase ISLpn5 | Transposase |
| CCS41_RS16190 () | 10005..10369 | - | 365 | Protein_13 | transposase | - |
| CCS41_RS13830 () | 10428..10763 | - | 336 | WP_119797790.1 | hypothetical protein | - |
| CCS41_RS13835 () | 10800..11339 | - | 540 | WP_162860110.1 | hypothetical protein | - |
| CCS41_RS13840 () | 11440..11973 | - | 534 | WP_119797792.1 | Tn3 family transposase TnpA_ISPsy30 | Transposase |
| CCS41_RS13845 () | 11995..12252 | - | 258 | WP_119797793.1 | Tn3 family transposase ISPsy42 | Transposase |
| CCS41_RS13855 () | 12567..13589 | + | 1023 | WP_119797794.1 | IS630 family transposase ISVa15 | Transposase |
| CCS41_RS13860 () | 13483..14682 | - | 1200 | WP_119797795.1 | putative protein YggR | VF |
| CCS41_RS13865 () | 14766..15134 | + | 369 | WP_119797707.1 | IS630 transposase-related protein | - |
| CCS41_RS13870 () | 15187..15591 | + | 405 | Protein_21 | transposase | - |
| CCS41_RS13875 () | 15598..16701 | - | 1104 | Protein_22 | conjugal transfer protein TrbA | - |
| CCS41_RS13880 () | 16781..17185 | - | 405 | WP_072549704.1 | type II toxin-antitoxin system VapC family toxin | - |
| CCS41_RS13885 () | 17196..17447 | - | 252 | WP_072549705.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| CCS41_RS13890 () | 17556..18194 | - | 639 | WP_072549706.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| CCS41_RS13895 () | 18273..20418 | - | 2146 | Protein_26 | DotA/TraY family protein | - |
| CCS41_RS13900 () | 20662..20814 | + | 153 | WP_119797796.1 | Hok/Gef family protein | - |
| CCS41_RS13905 () | 20884..21444 | - | 561 | WP_119797797.1 | conjugal transfer protein TraX | - |
| CCS41_RS13910 () | 21437..22630 | - | 1194 | WP_162860111.1 | conjugal transfer protein TraW | - |
| CCS41_RS13915 () | 22640..25710 | - | 3071 | Protein_30 | hypothetical protein | VF |
| CCS41_RS13920 () | 25859..26140 | + | 282 | WP_119797798.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| CCS41_RS13925 () | 26137..26433 | + | 297 | WP_119797799.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CCS41_RS13930 () | 26458..27072 | - | 615 | WP_119797800.1 | TraT conjugal transfer protein | - |
| CCS41_RS13935 () | 27121..27516 | - | 396 | WP_119797801.1 | TraR conjugal transfer protein | - |
| CCS41_RS13940 () | 27573..27935 | - | 363 | WP_119797802.1 | conjugal transfer protein TraQ | - |
| CCS41_RS15780 () | 27920..28114 | - | 195 | WP_162860112.1 | hypothetical protein | - |
| CCS41_RS13945 () | 28125..28880 | - | 756 | WP_119797803.1 | conjugal transfer protein TraP | - |
| CCS41_RS13950 () | 28877..30088 | - | 1212 | WP_119797804.1 | hypothetical protein | VF |
| CCS41_RS13955 () | 30092..31042 | - | 951 | WP_119797890.1 | hypothetical protein | VF |
| CCS41_RS13960 () | 31056..31740 | - | 685 | Protein_40 | hypothetical protein | VF |
| CCS41_RS13965 () | 31765..32199 | - | 435 | WP_119797805.1 | conjugal transfer protein TraL | - |
| CCS41_RS13970 () | 32220..33143 | - | 924 | WP_119797806.1 | hypothetical protein | - |
| CCS41_RS13975 () | 33200..35011 | - | 1812 | WP_119797807.1 | DNA primase | - |
| CCS41_RS13980 () | 35024..35284 | - | 261 | WP_119797808.1 | IcmT/TraK family protein | - |
| CCS41_RS13985 () | 35396..35638 | + | 243 | WP_119797809.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| CCS41_RS13990 () | 35647..36042 | + | 396 | WP_119797891.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| CCS41_RS15785 () | 35995..36567 | - | 573 | WP_119963870.1 | hypothetical protein | - |
| CCS41_RS13995 () | 36598..36801 | + | 204 | WP_119797810.1 | type II toxin-antitoxin system YafQ family toxin | - |
| CCS41_RS14000 () | 36816..37982 | - | 1167 | WP_119797811.1 | putative protein YggR | VF |
| CCS41_RS14005 () | 37984..38772 | - | 789 | WP_119797812.1 | hypothetical protein | VF |
| CCS41_RS14010 () | 38769..39218 | - | 450 | WP_119797813.1 | DotD/TraH family lipoprotein | - |
| CCS41_RS14015 () | 39258..39449 | - | 192 | WP_119797814.1 | Rop family plasmid primer RNA-binding protein | - |
| CCS41_RS14020 () | 39560..40921 | - | 1362 | WP_119797815.1 | hypothetical protein | VF |
| CCS41_RS14025 () | 40957..41640 | - | 684 | WP_119797816.1 | prepilin peptidase | - |
| CCS41_RS14030 () | 41588..42057 | - | 470 | Protein_55 | hypothetical protein | VF |
| CCS41_RS14035 () | 42156..42407 | + | 252 | WP_119797817.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| CCS41_RS14040 () | 42404..42692 | + | 289 | Protein_57 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CCS41_RS14045 () | 42881..43204 | + | 324 | WP_119797818.1 | IS5 family transposase ISAzba3 | Transposase |
| CCS41_RS14050 () | 43318..44055 | - | 738 | WP_162860113.1 | helix-turn-helix domain-containing protein | - |
| CCS41_RS14055 () | 44541..44729 | - | 189 | WP_119797820.1 | hypothetical protein | - |
| CCS41_RS14065 () | 44997..45152 | - | 156 | WP_162860114.1 | transposase | - |
| CCS41_RS14070 () | 46854..52142 | + | 5289 | WP_119797823.1 | Dimodular nonribosomal peptide synthase | VF |
| CCS41_RS14075 () | 52073..53167 | + | 1095 | WP_119797824.1 | Dimodular nonribosomal peptide synthase | VF |
| CCS41_RS14080 () | 53167..59766 | + | 6600 | WP_119797825.1 | Linear gramicidin synthase subunit B | VF |
| CCS41_RS14085 () | 59718..62093 | + | 2376 | WP_205411522.1 | Linear gramicidin synthase subunit B | VF |
| CCS41_RS14090 () | 62090..64294 | + | 2205 | WP_119797827.1 | Linear gramicidin synthase subunit D | VF |
| CCS41_RS14095 () | 64225..72966 | + | 8742 | WP_119797828.1 | Linear gramicidin synthase subunit B | VF |
| CCS41_RS14100 () | 72923..73690 | + | 768 | WP_119797829.1 | 3-oxoacyl-[acyl-carrier-protein] reductase FabG | VF |
| CCS41_RS14105 () | 73736..73942 | + | 207 | WP_119797830.1 | Protein MbtH | VF |
| CCS41_RS14110 () | 73990..75660 | + | 1671 | WP_119797831.1 | ABC transporter ATP-binding/permease protein YojI | VF |
| CCS41_RS14115 () | 75682..80838 | + | 5157 | WP_119797832.1 | Chondramide synthase cmdD | VF |
| CCS41_RS14120 () | 80754..84089 | + | 3336 | WP_162860116.1 | Dimodular nonribosomal peptide synthase | VF |
| CCS41_RS14125 () | 84086..84820 | + | 735 | WP_119797834.1 | hypothetical protein | - |
| CCS41_RS14130 () | 84854..86056 | + | 1203 | WP_205411520.1 | hypothetical protein | - |
| CCS41_RS14135 () | 86047..86583 | + | 537 | WP_119797836.1 | hypothetical protein | - |
| CCS41_RS14140 () | 86624..87148 | + | 525 | WP_119797837.1 | aspartyl/asparaginyl beta-hydroxylase domain-containing protein | - |
| CCS41_RS14145 () | 87162..88241 | + | 1080 | WP_119797892.1 | NAD-dependent epimerase/dehydratase family protein | - |
| CCS41_RS14150 () | 88313..88618 | + | 306 | WP_119797838.1 | IS3 family transposase ISStau1 | Transposase |
| CCS41_RS15790 () | 88655..88852 | + | 198 | WP_162860118.1 | hypothetical protein | - |
| CCS41_RS14155 () | 88899..89843 | + | 945 | WP_119797839.1 | SDR family oxidoreductase | - |
| CCS41_RS14160 () | 90094..90396 | + | 303 | Protein_81 | IS630 family transposase ISMae21 | Transposase |
| CCS41_RS14165 () | 90377..90964 | + | 588 | Protein_82 | IS630 family transposase ISOt3 | Transposase |
| CCS41_RS14175 () | 91240..92253 | - | 1014 | WP_119797842.1 | IS4 family transposase ISWosp2 | Transposase |
| CCS41_RS14180 () | 92750..92941 | + | 192 | WP_119797843.1 | IS630 family transposase ISTer1 | Transposase |
| CCS41_RS14185 () | 93070..93198 | + | 129 | WP_119797844.1 | transposase | - |
| CCS41_RS14190 () | 93238..95250 | + | 2013 | Protein_86 | Tn3 family transposase | - |
| CCS41_RS14195 () | 95515..96105 | + | 591 | WP_119797845.1 | hypothetical protein | - |
| CCS41_RS14200 () | 96523..96690 | + | 168 | WP_162920583.1 | hypothetical protein | - |
| CCS41_RS14205 () | 96890..97753 | + | 864 | WP_119797847.1 | hypothetical protein | - |
| CCS41_RS14210 () | 98159..99268 | - | 1110 | WP_119797848.1 | protein kinase family protein | - |
| CCS41_RS14215 () | 99297..99413 | - | 117 | Protein_91 | IS5/IS1182 family transposase | - |
| CCS41_RS14220 () | 99494..100588 | + | 1095 | WP_119797849.1 | ISAs1 family transposase ISSpu3 | Transposase |
| CCS41_RS14225 () | 100817..101071 | - | 255 | WP_119797850.1 | hypothetical protein | - |
| CCS41_RS14230 () | 101068..101853 | - | 786 | WP_119797851.1 | ParA family protein | - |
| CCS41_RS14235 () | 102734..103360 | + | 627 | WP_119797852.1 | hypothetical protein | - |
| CCS41_RS14240 () | 103373..104515 | + | 1143 | WP_119797853.1 | MotA/TolQ/ExbB proton channel family protein | - |
| CCS41_RS14245 () | 104519..105838 | + | 1320 | WP_119797854.1 | TolC family protein | - |
| CCS41_RS14250 () | 105842..106699 | + | 858 | WP_119797855.1 | biotin/lipoyl-binding protein | - |
| CCS41_RS14255 () | 106612..107073 | + | 462 | Protein_99 | Leukotoxin export ATP-binding protein LtxB | VF |
| CCS41_RS14260 () | 107339..109003 | + | 1665 | WP_119797856.1 | DDE-type integrase/transposase/recombinase | - |
| CCS41_RS14265 () | 109006..109915 | + | 910 | Protein_101 | TniB family NTP-binding protein | - |
| CCS41_RS14270 () | 109912..111084 | + | 1173 | WP_119797645.1 | TniQ family protein | - |
| CCS41_RS14275 () | 111200..111814 | + | 615 | WP_119797644.1 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| CCS41_RS14280 () | 111894..112187 | + | 294 | Protein_104 | Tn3 family transposase TnpR_ISAzs17 | Transposase |
| CCS41_RS14285 () | 112470..112838 | - | 369 | WP_119797857.1 | hypothetical protein | - |
| CCS41_RS14290 () | 113630..116299 | + | 2670 | WP_119797858.1 | VCBS repeat-containing protein | - |
| CCS41_RS14295 () | 116383..116892 | + | 510 | WP_119797859.1 | hypothetical protein | - |
| CCS41_RS15795 () | 117297..117449 | - | 153 | WP_162860119.1 | hypothetical protein | - |
| CCS41_RS14300 () | 117446..118156 | - | 711 | WP_119797860.1 | PAS domain-containing protein | - |
| CCS41_RS14305 () | 118832..119563 | + | 732 | WP_119797861.1 | LuxR family transcriptional regulator | - |
| CCS41_RS14310 () | 119955..120587 | + | 633 | WP_119797862.1 | acyl-homoserine-lactone synthase | - |
| CCS41_RS14320 () | 121098..121832 | + | 735 | WP_119797864.1 | replication initiation protein | - |
| CCS41_RS14325 () | 122048..122230 | + | 183 | WP_119797865.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| CCS41_RS14330 () | 122259..122687 | + | 429 | WP_119797866.1 | hypothetical protein | Antitoxin Detail |
| CCS41_RS14335 () | 122881..123150 | - | 270 | WP_119797867.1 | transcriptional regulator | - |
| CCS41_RS14340 () | 123994..124296 | + | 303 | WP_119797868.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CCS41_RS14345 () | 124387..124818 | + | 432 | WP_119797869.1 | IS200-IS605 family transposase ISAzo20 | Transposase |
| CCS41_RS14350 () | 124857..125045 | - | 189 | Protein_118 | hypothetical protein | - |
| CCS41_RS14355 () | 125231..125539 | - | 309 | WP_119797870.1 | hypothetical protein | - |
| CCS41_RS14360 () | 125606..126253 | - | 648 | WP_119797871.1 | ParA family protein | - |
| CCS41_RS14365 () | 126501..127016 | - | 516 | WP_119797872.1 | GNAT family N-acetyltransferase | - |
| CCS41_RS14370 () | 127000..127293 | - | 294 | WP_119797873.1 | DUF1778 domain-containing protein | - |
| CCS41_RS14380 () | 127935..128009 | - | 75 | Protein_123 | Tn3 family transposase TnpA_TnEc1 | Transposase |
| CCS41_RS14385 () | 127981..130966 | - | 2986 | Protein_124 | Tn3 family transposase TnpA_ISSba14 | Transposase |
| CCS41_RS14390 () | 131135..131782 | + | 648 | WP_119797432.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| CCS41_RS14395 () | 131784..131990 | - | 207 | WP_119797874.1 | hypothetical protein | - |
| CCS41_RS14400 () | 132118..133590 | + | 1473 | WP_119797875.1 | ankyrin repeat domain-containing protein | - |
| CCS41_RS14405 () | 133608..134612 | + | 1005 | WP_205411521.1 | hypothetical protein | VF |
| CCS41_RS14410 () | 134708..137368 | + | 2661 | WP_162860121.1 | hypothetical protein | - |
| CCS41_RS14415 () | 137365..137694 | + | 330 | WP_162860122.1 | hypothetical protein | - |
| CCS41_RS14420 () | 137938..138960 | - | 1023 | WP_119797794.1 | IS630 family transposase ISVa15 | Transposase |
| CCS41_RS14425 () | 139060..139809 | + | 750 | Protein_132 | IS5 family transposase ISFw1 | Transposase |
| CCS41_RS14430 () | 140143..140772 | + | 630 | WP_119797879.1 | AAA family ATPase | - |
| CCS41_RS14435 () | 140769..141002 | + | 234 | WP_119797880.1 | hypothetical protein | - |
| CCS41_RS14440 () | 141102..141463 | + | 362 | Protein_135 | IS630 family transposase | - |
| CCS41_RS14445 () | 141565..141876 | + | 312 | WP_119797893.1 | type II toxin-antitoxin system HigB family toxin | Toxin Detail |
| CCS41_RS14450 () | 141873..142337 | + | 465 | WP_119797881.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| CCS41_RS14455 () | 142442..142735 | + | 294 | WP_119797882.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| CCS41_RS14460 () | 142732..143232 | + | 501 | WP_119797883.1 | GNAT family N-acetyltransferase | Toxin Detail |
| CCS41_RS14465 () | 143389..143703 | - | 315 | WP_119797884.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| CCS41_RS14475 () | 143849..144367 | - | 519 | WP_119797885.1 | type II toxin-antitoxin system YhaV family toxin | Toxin Detail |
| CCS41_RS14480 () | 144376..144741 | - | 366 | WP_119797886.1 | type II toxin-antitoxin system PrlF family antitoxin | - |
| CCS41_RS14485 () | 144933..145914 | + | 982 | Protein_143 | IS701 family transposase ISMhu9 | Transposase |
| CCS41_RS14490 () | 146034..146303 | - | 270 | WP_119797887.1 | hypothetical protein | - |
| CCS41_RS14495 () | 146303..146938 | - | 636 | WP_119797888.1 | Signal recognition particle 54 kDa protein | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|