MGE detailed information
MGE type: Prophage MGE length: 33462 bp
Accession: NZ_CP012869 Location: 2977209..3010670 Organism: Escherichia coli strain K-12 substr. MG1655_TMP32XR1 Replicon: chromosome
Accession: NZ_CP012869 Location: 2977209..3010670 Organism: Escherichia coli strain K-12 substr. MG1655_TMP32XR1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QR62_RS14595 () | 2973108..2974328 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| QR62_RS14600 () | 2974453..2975148 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| QR62_RS14605 () | 2975101..2976393 | - | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| QR62_RS14610 () | 2976552..2977166 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| QR62_RS14615 () | 2977209..2978063 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit | - |
| QR62_RS14620 () | 2978065..2978682 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| QR62_RS14625 () | 2978693..2981116 | - | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| QR62_RS14630 () | 2981177..2983603 | - | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
| QR62_RS14635 () | 2983802..2984107 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| QR62_RS14640 () | 2984215..2984925 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| QR62_RS14645 () | 2984928..2985488 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| QR62_RS14650 () | 2985523..2985864 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| QR62_RS14655 () | 2985999..2986325 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| QR62_RS14660 () | 2986531..2987745 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| QR62_RS14665 () | 2987757..2988776 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| QR62_RS25160 () | 2988834..2988944 | + | 111 | WP_001360138.1 | hypothetical protein | - |
| QR62_RS25625 () | 2988964..2990121 | - | 1158 | Protein_2775 | Putative defective protein IntQ ; Integrase | Integrase |
| QR62_RS14675 () | 2990135..2990830 | - | 696 | Protein_2776 | IS3 family transposase IS2 | Transposase |
| QR62_RS24125 () | 2990827..2991594 | - | 768 | Protein_2777 | exonuclease | - |
| QR62_RS14685 () | 2991687..2991878 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| QR62_RS14690 () | 2991875..2992063 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| QR62_RS14700 () | 2992631..2992849 | - | 219 | WP_001171942.1 | hypothetical protein | - |
| QR62_RS14705 () | 2993009..2993164 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| QR62_RS14710 () | 2993331..2993738 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| QR62_RS14715 () | 2993822..2994052 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| QR62_RS14720 () | 2994036..2994314 | + | 279 | Protein_2784 | hypothetical protein | - |
| QR62_RS22955 () | 2994349..2994498 | + | 150 | WP_011443592.1 | hypothetical protein | - |
| QR62_RS14725 () | 2994935..2995267 | - | 333 | WP_001301033.1 | protein FlxA | - |
| QR62_RS24140 () | 2995470..2995775 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| QR62_RS14730 () | 2995800..2996039 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| QR62_RS14735 () | 2996039..2996326 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| QR62_RS14740 () | 2996398..2996553 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| QR62_RS14745 () | 2996770..2997021 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| QR62_RS14750 () | 2997088..2997366 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| QR62_RS14755 () | 2997368..2998417 | + | 1050 | WP_001393597.1 | DUF968 domain-containing protein | - |
| QR62_RS14760 () | 2998431..2999183 | + | 753 | WP_001047135.1 | antitermination protein | - |
| QR62_RS25635 () | 2999461..2999550 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| QR62_RS14765 () | 2999605..2999817 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| QR62_RS14770 () | 3000118..3000333 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| QR62_RS26160 () | 3000697..3000867 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| QR62_RS14775 () | 3001087..3001302 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| QR62_RS14780 () | 3001307..3001618 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| QR62_RS14785 () | 3001615..3002148 | + | 534 | WP_001092971.1 | lysozyme | - |
| QR62_RS14790 () | 3002145..3002642 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| QR62_RS14795 () | 3003005..3003217 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| QR62_RS24145 () | 3003228..3003416 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| QR62_RS25640 () | 3003419..3003484 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| QR62_RS14800 () | 3003563..3003718 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| QR62_RS14805 () | 3003890..3004063 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| QR62_RS14810 () | 3004215..3004625 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| QR62_RS14815 () | 3004683..3004916 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| QR62_RS14820 () | 3005305..3005874 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| QR62_RS14825 () | 3005825..3006787 | + | 963 | WP_001027733.1 | phage tail protein | - |
| QR62_RS14830 () | 3006787..3007362 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| QR62_RS14835 () | 3007460..3008050 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| QR62_RS14840 () | 3008367..3008600 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| QR62_RS25645 () | 3008669..3008782 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| QR62_RS14845 () | 3009303..3010670 | + | 1368 | Protein_2816 | MHS family MFS transporter | - |
| QR62_RS14850 () | 3010759..3012219 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| QR62_RS14855 () | 3012254..3012457 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| QR62_RS14860 () | 3012634..3013320 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| QR62_RS14865 () | 3013409..3014155 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0 |