MGE detailed information
MGE type: Genomic_island MGE length: 16001 bp
Accession: NZ_CP010441 Location: 4000080..4016080 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Accession: NZ_CP010441 Location: 4000080..4016080 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SH03_RS19735 () | 3995365..3996729 | - | 1365 | WP_000622126.1 | L-serine ammonia-lyase | - |
| SH03_RS19740 () | 3996801..3997190 | - | 390 | WP_000719990.1 | enamine/imine deaminase | - |
| SH03_RS19745 () | 3997204..3999498 | - | 2295 | WP_000861734.1 | 2-ketobutyrate formate-lyase/pyruvate formate-lyase | - |
| SH03_RS24565 () | 3999532..3999933 | - | 402 | Protein_3732 | propionate/acetate kinase | - |
| SH03_RS19755 () | 4000080..4001096 | - | 1017 | WP_010723085.1 | IS5 family transposase IS5D | Transposase |
| SH03_RS19760 () | 4001127..4001939 | - | 813 | Protein_3734 | acetate/propionate family kinase | - |
| SH03_RS19765 () | 4001965..4003296 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| SH03_RS19770 () | 4003318..4004307 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| SH03_RS19775 () | 4004406..4005344 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| SH03_RS25930 () | 4005659..4005877 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| SH03_RS19785 () | 4006133..4006672 | + | 540 | WP_000675733.1 | hypothetical protein | - |
| SH03_RS19790 () | 4006694..4007881 | + | 1188 | WP_000484600.1 | YhaC family protein | - |
| SH03_RS19795 () | 4008904..4010049 | - | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| SH03_RS19800 () | 4010146..4011036 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| SH03_RS19805 () | 4011066..4011836 | - | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| SH03_RS19810 () | 4011852..4013186 | - | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| SH03_RS19815 () | 4013561..4015132 | + | 1572 | WP_001273753.1 | galactarate dehydratase | - |
| SH03_RS19820 () | 4015281..4015616 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| SH03_RS19825 () | 4015616..4016080 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| SH03_RS19830 () | 4016135..4016944 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| SH03_RS19835 () | 4017193..4018473 | + | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| SH03_RS19840 () | 4018496..4018969 | + | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| SH03_RS19845 () | 4018980..4019351 | + | 372 | Protein_3751 | PTS sugar transporter subunit IIC | - |
| SH03_RS19850 () | 4019347..4019904 | + | 558 | Protein_3752 | amidohydrolase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20042 | CP009789 | 3247092..3263092 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.008 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.008 |