MGE detailed information
MGE type: Prophage MGE length: 33462 bp
Accession: NZ_CP010441 Location: 2374573..2408034 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Accession: NZ_CP010441 Location: 2374573..2408034 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SH03_RS11675 () | 2371088..2371834 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| SH03_RS11680 () | 2371923..2372609 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| SH03_RS11685 () | 2372786..2372989 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| SH03_RS11690 () | 2373024..2374484 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| SH03_RS11695 () | 2374573..2375940 | - | 1368 | Protein_2195 | MHS family MFS transporter | - |
| SH03_RS25570 () | 2376461..2376574 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| SH03_RS11700 () | 2376643..2376876 | + | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| SH03_RS11705 () | 2377193..2377783 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| SH03_RS11710 () | 2377881..2378456 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| SH03_RS11715 () | 2378456..2379418 | - | 963 | WP_001027733.1 | phage tail protein | - |
| SH03_RS11720 () | 2379369..2379938 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| SH03_RS11725 () | 2380327..2380560 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| SH03_RS11730 () | 2380618..2381028 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| SH03_RS11735 () | 2381180..2381353 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| SH03_RS11740 () | 2381525..2381680 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| SH03_RS25575 () | 2381759..2381824 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| SH03_RS24005 () | 2381827..2382015 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| SH03_RS11745 () | 2382026..2382238 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| SH03_RS11750 () | 2382601..2383098 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| SH03_RS11755 () | 2383095..2383628 | - | 534 | WP_001092971.1 | lysozyme | - |
| SH03_RS11760 () | 2383625..2383936 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| SH03_RS11765 () | 2383941..2384156 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| SH03_RS11770 () | 2384910..2385125 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| SH03_RS11775 () | 2385426..2385638 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| SH03_RS25580 () | 2385693..2385782 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| SH03_RS11780 () | 2386060..2386812 | - | 753 | WP_001047135.1 | antitermination protein | - |
| SH03_RS11785 () | 2386826..2387875 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| SH03_RS11790 () | 2387877..2388155 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| SH03_RS11795 () | 2388222..2388473 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| SH03_RS11800 () | 2388690..2388845 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| SH03_RS11805 () | 2388917..2389204 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| SH03_RS11810 () | 2389204..2389443 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| SH03_RS24010 () | 2389468..2389773 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| SH03_RS11815 () | 2389976..2390308 | + | 333 | WP_001301033.1 | protein FlxA | - |
| SH03_RS22980 () | 2390745..2390894 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| SH03_RS11820 () | 2390929..2391207 | - | 279 | Protein_2226 | hypothetical protein | - |
| SH03_RS11825 () | 2391191..2391421 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| SH03_RS11830 () | 2391505..2391912 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| SH03_RS11835 () | 2392079..2392234 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| SH03_RS11840 () | 2392394..2392612 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| SH03_RS11850 () | 2393180..2393368 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| SH03_RS11855 () | 2393365..2393556 | + | 192 | WP_038432577.1 | lysis protein YdfD | - |
| SH03_RS24025 () | 2393649..2394416 | + | 768 | Protein_2233 | exonuclease | - |
| SH03_RS11865 () | 2394413..2395108 | + | 696 | Protein_2234 | IS3 family transposase IS2 | Transposase |
| SH03_RS25590 () | 2395122..2396279 | + | 1158 | Protein_2235 | Putative defective protein IntQ ; Integrase | Integrase |
| SH03_RS25080 () | 2396299..2396409 | - | 111 | WP_001360138.1 | hypothetical protein | - |
| SH03_RS11875 () | 2396467..2397486 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| SH03_RS11880 () | 2397498..2398712 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| SH03_RS11885 () | 2398918..2399244 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| SH03_RS11890 () | 2399379..2399720 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| SH03_RS11895 () | 2399755..2400315 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| SH03_RS11900 () | 2400318..2401028 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| SH03_RS11905 () | 2401136..2401441 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| SH03_RS11910 () | 2401640..2404066 | + | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
| SH03_RS11915 () | 2404127..2406550 | + | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| SH03_RS11920 () | 2406561..2407178 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| SH03_RS11925 () | 2407180..2408034 | + | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit | - |
| SH03_RS11930 () | 2408077..2408691 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| SH03_RS11935 () | 2408850..2410142 | + | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| SH03_RS11940 () | 2410095..2410790 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| SH03_RS11945 () | 2410915..2412135 | - | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0 |