MGE detailed information
MGE type: Genomic_island MGE length: 16001 bp
Accession: NZ_CP010439 Location: 3996989..4012989 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Accession: NZ_CP010439 Location: 3996989..4012989 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SH02_RS19790 () | 3992274..3993638 | - | 1365 | WP_000622126.1 | L-serine ammonia-lyase | - |
| SH02_RS19795 () | 3993710..3994099 | - | 390 | WP_000719990.1 | enamine/imine deaminase | - |
| SH02_RS19800 () | 3994113..3996407 | - | 2295 | WP_000861734.1 | 2-ketobutyrate formate-lyase/pyruvate formate-lyase | - |
| SH02_RS24660 () | 3996441..3996842 | - | 402 | Protein_3747 | propionate/acetate kinase | - |
| SH02_RS19810 () | 3996989..3998005 | - | 1017 | WP_010723085.1 | IS5 family transposase IS5D | Transposase |
| SH02_RS19815 () | 3998036..3998848 | - | 813 | Protein_3749 | acetate/propionate family kinase | - |
| SH02_RS19820 () | 3998874..4000205 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| SH02_RS19825 () | 4000227..4001216 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| SH02_RS19830 () | 4001315..4002253 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| SH02_RS26030 () | 4002568..4002786 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| SH02_RS19840 () | 4003042..4003581 | + | 540 | WP_000675733.1 | hypothetical protein | - |
| SH02_RS19845 () | 4003603..4004790 | + | 1188 | WP_000484600.1 | YhaC family protein | - |
| SH02_RS19850 () | 4005813..4006958 | - | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| SH02_RS19855 () | 4007055..4007945 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| SH02_RS19860 () | 4007975..4008745 | - | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| SH02_RS19865 () | 4008761..4010095 | - | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| SH02_RS19870 () | 4010470..4012041 | + | 1572 | WP_001273753.1 | galactarate dehydratase | - |
| SH02_RS19875 () | 4012190..4012525 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| SH02_RS19880 () | 4012525..4012989 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| SH02_RS19885 () | 4013044..4013853 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| SH02_RS19890 () | 4014102..4015382 | + | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| SH02_RS19895 () | 4015405..4015878 | + | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| SH02_RS19900 () | 4015889..4016260 | + | 372 | Protein_3766 | PTS sugar transporter subunit IIC | - |
| SH02_RS19905 () | 4016256..4016813 | + | 558 | Protein_3767 | amidohydrolase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20042 | CP009789 | 3247092..3263092 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.008 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.008 |