MGE detailed information
MGE type: Genomic_island MGE length: 9947 bp
Accession: NZ_CP010231 Location: 2559573..2569519 Organism: Escherichia coli strain S30 Replicon: chromosome
Accession: NZ_CP010231 Location: 2559573..2569519 Organism: Escherichia coli strain S30 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG68_RS13375 () | 2555406..2556737 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| RG68_RS13380 () | 2556759..2557748 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| RG68_RS13385 () | 2557847..2558785 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| RG68_RS13390 () | 2559099..2559317 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| RG68_RS13395 () | 2559573..2560111 | + | 539 | Protein_2415 | hypothetical protein | - |
| RG68_RS13400 () | 2560133..2561320 | + | 1188 | WP_073546577.1 | YhaC family protein | - |
| RG68_RS13410 () | 2562343..2563488 | - | 1146 | WP_001424370.1 | glycerate 2-kinase | - |
| RG68_RS13415 () | 2563585..2564475 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| RG68_RS13420 () | 2564505..2565275 | - | 771 | WP_001723934.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| RG68_RS13425 () | 2565291..2566625 | - | 1335 | WP_001723935.1 | galactarate/glucarate/glycerate transporter GarP | - |
| RG68_RS13430 () | 2567000..2568571 | + | 1572 | WP_001723936.1 | galactarate dehydratase | - |
| RG68_RS13435 () | 2568720..2569055 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| RG68_RS13440 () | 2569055..2569519 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| RG68_RS13445 () | 2569574..2570383 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| RG68_RS13455 () | 2570632..2571912 | + | 1281 | WP_000681903.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| RG68_RS13460 () | 2571935..2572408 | + | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| RG68_RS13465 () | 2572419..2573198 | + | 780 | WP_000406214.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| RG68_RS13470 () | 2573188..2574066 | + | 879 | WP_001300474.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| RG68_RS13475 () | 2574084..2574518 | + | 435 | WP_000948824.1 | PTS sugar transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.009 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.009 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.009 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.01 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.009 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.009 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.01 |