MGE detailed information
MGE type: Genomic_island MGE length: 11673 bp
Accession: NZ_CP010163 Location: 884271..895943 Organism: Escherichia coli strain H2 Replicon: chromosome
Accession: NZ_CP010163 Location: 884271..895943 Organism: Escherichia coli strain H2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG45_RS04710 () | 879272..879706 | - | 435 | WP_000948824.1 | PTS sugar transporter subunit IIA | - |
| RG45_RS04715 () | 879724..880602 | - | 879 | WP_001300474.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| RG45_RS04720 () | 880592..881371 | - | 780 | WP_000406214.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| RG45_RS04725 () | 881382..881855 | - | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| RG45_RS04730 () | 881878..883158 | - | 1281 | WP_000681903.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| RG45_RS04740 () | 883407..884216 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| RG45_RS04745 () | 884271..884735 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| RG45_RS04750 () | 884735..885070 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| RG45_RS04755 () | 885219..886790 | - | 1572 | WP_001723936.1 | galactarate dehydratase | - |
| RG45_RS04760 () | 887165..888499 | + | 1335 | WP_001723935.1 | galactarate/glucarate/glycerate transporter GarP | - |
| RG45_RS04765 () | 888515..889285 | + | 771 | WP_001723934.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| RG45_RS04770 () | 889315..890205 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| RG45_RS04775 () | 890302..891447 | + | 1146 | WP_032298172.1 | glycerate 2-kinase | - |
| RG45_RS04785 () | 892470..893657 | - | 1188 | WP_024238569.1 | YhaC family protein | - |
| RG45_RS26580 () | 893679..893965 | - | 287 | Protein_830 | hypothetical protein | - |
| RG45_RS26585 () | 893975..894217 | - | 243 | WP_123009844.1 | hypothetical protein | - |
| RG45_RS26910 () | 894473..894691 | - | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| RG45_RS04805 () | 895005..895943 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| RG45_RS04810 () | 896042..897031 | + | 990 | WP_073511785.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| RG45_RS04815 () | 897053..898384 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| RG45_RS04820 () | 898410..899618 | + | 1209 | WP_001295545.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.008 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.008 |