MGE detailed information
MGE type: Genomic_island MGE length: 16001 bp
Accession: NZ_CP009789 Location: 3247092..3263092 Organism: Escherichia coli K-12 strain K-12 ER3413 Replicon: chromosome
Accession: NZ_CP009789 Location: 3247092..3263092 Organism: Escherichia coli K-12 strain K-12 ER3413 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ER3413_RS16080 () | 3242377..3243741 | - | 1365 | WP_000622126.1 | L-serine ammonia-lyase | - |
| ER3413_RS16085 () | 3243813..3244202 | - | 390 | WP_000719990.1 | enamine/imine deaminase | - |
| ER3413_RS16090 () | 3244216..3246510 | - | 2295 | WP_000861734.1 | 2-ketobutyrate formate-lyase/pyruvate formate-lyase | - |
| ER3413_RS24045 () | 3246544..3246945 | - | 402 | Protein_3065 | propionate/acetate kinase | - |
| ER3413_RS16100 () | 3247092..3248108 | - | 1017 | WP_010723085.1 | IS5 family transposase IS5D | Transposase |
| ER3413_RS16105 () | 3248139..3248951 | - | 813 | Protein_3067 | acetate/propionate family kinase | - |
| ER3413_RS16110 () | 3248977..3250308 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| ER3413_RS16115 () | 3250330..3251319 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| ER3413_RS16120 () | 3251418..3252356 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| ER3413_RS25735 () | 3252671..3252889 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| ER3413_RS16130 () | 3253145..3253684 | + | 540 | WP_000675733.1 | hypothetical protein | - |
| ER3413_RS16135 () | 3253706..3254893 | + | 1188 | WP_000484600.1 | YhaC family protein | - |
| ER3413_RS16140 () | 3255916..3257061 | - | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| ER3413_RS16145 () | 3257158..3258048 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| ER3413_RS16150 () | 3258078..3258848 | - | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| ER3413_RS16155 () | 3258864..3260198 | - | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| ER3413_RS16160 () | 3260573..3262144 | + | 1572 | WP_001273753.1 | galactarate dehydratase | - |
| ER3413_RS16165 () | 3262293..3262628 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| ER3413_RS16170 () | 3262628..3263092 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| ER3413_RS16175 () | 3263147..3263956 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| ER3413_RS16180 () | 3264205..3265485 | + | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| ER3413_RS16185 () | 3265508..3265981 | + | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| ER3413_RS16190 () | 3265992..3266363 | + | 372 | Protein_3084 | PTS sugar transporter subunit IIC | - |
| ER3413_RS16195 () | 3266359..3266916 | + | 558 | Protein_3085 | amidohydrolase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20042 | CP009789 | 3247092..3263092 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.008 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.008 |