MGE detailed information
MGE type: Genomic_island MGE length: 16001 bp
Accession: NZ_CP009644 Location: 3247099..3263099 Organism: Escherichia coli ER2796 strain K-12 ER2796 Replicon: chromosome
Accession: NZ_CP009644 Location: 3247099..3263099 Organism: Escherichia coli ER2796 strain K-12 ER2796 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ER2796_RS16080 () | 3242384..3243748 | - | 1365 | WP_000622126.1 | L-serine ammonia-lyase | - |
| ER2796_RS16085 () | 3243820..3244209 | - | 390 | WP_000719990.1 | enamine/imine deaminase | - |
| ER2796_RS16090 () | 3244223..3246517 | - | 2295 | WP_000861734.1 | 2-ketobutyrate formate-lyase/pyruvate formate-lyase | - |
| ER2796_RS24045 () | 3246551..3246952 | - | 402 | Protein_3065 | propionate/acetate kinase | - |
| ER2796_RS16100 () | 3247099..3248115 | - | 1017 | WP_010723085.1 | IS5 family transposase IS5D | Transposase |
| ER2796_RS16105 () | 3248146..3248958 | - | 813 | Protein_3067 | acetate/propionate family kinase | - |
| ER2796_RS16110 () | 3248984..3250315 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| ER2796_RS16115 () | 3250337..3251326 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| ER2796_RS16120 () | 3251425..3252363 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| ER2796_RS25740 () | 3252678..3252896 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| ER2796_RS16130 () | 3253152..3253691 | + | 540 | WP_000675733.1 | hypothetical protein | - |
| ER2796_RS16135 () | 3253713..3254900 | + | 1188 | WP_000484600.1 | YhaC family protein | - |
| ER2796_RS16140 () | 3255923..3257068 | - | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| ER2796_RS16145 () | 3257165..3258055 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| ER2796_RS16150 () | 3258085..3258855 | - | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| ER2796_RS16155 () | 3258871..3260205 | - | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| ER2796_RS16160 () | 3260580..3262151 | + | 1572 | WP_001273753.1 | galactarate dehydratase | - |
| ER2796_RS16165 () | 3262300..3262635 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| ER2796_RS16170 () | 3262635..3263099 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| ER2796_RS16175 () | 3263154..3263963 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| ER2796_RS16180 () | 3264212..3265492 | + | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| ER2796_RS16185 () | 3265515..3265988 | + | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| ER2796_RS16190 () | 3265999..3266370 | + | 372 | Protein_3084 | PTS sugar transporter subunit IIC | - |
| ER2796_RS16195 () | 3266366..3266923 | + | 558 | Protein_3085 | amidohydrolase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20042 | CP009789 | 3247092..3263092 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.008 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.008 |