MGE detailed information
MGE type: Genomic_island MGE length: 11673 bp
Accession: NZ_AP025205 Location: 635316..646988 Organism: Escherichia coli strain 2017.04.03CC Replicon: chromosome
Accession: NZ_AP025205 Location: 635316..646988 Organism: Escherichia coli strain 2017.04.03CC Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPH27_RS03020 (630317) | 630317..630751 | - | 435 | WP_000948824.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
| LPH27_RS03025 (630769) | 630769..631647 | - | 879 | WP_001300474.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| LPH27_RS03030 (631637) | 631637..632416 | - | 780 | WP_000406214.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| LPH27_RS03035 (632427) | 632427..632900 | - | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| LPH27_RS03040 (632923) | 632923..634203 | - | 1281 | WP_000681903.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| LPH27_RS03045 (634452) | 634452..635261 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| LPH27_RS03050 (635316) | 635316..635780 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| LPH27_RS03055 (635780) | 635780..636115 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| LPH27_RS03060 (636264) | 636264..637835 | - | 1572 | WP_001723936.1 | galactarate dehydratase | - |
| LPH27_RS03065 (638210) | 638210..639544 | + | 1335 | WP_001723935.1 | galactarate/glucarate/glycerate transporter GarP | - |
| LPH27_RS03070 (639560) | 639560..640330 | + | 771 | WP_229266238.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| LPH27_RS03075 (640360) | 640360..641250 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| LPH27_RS03080 (641347) | 641347..642492 | + | 1146 | WP_001424370.1 | glycerate 2-kinase | - |
| LPH27_RS03090 (643515) | 643515..644702 | - | 1188 | WP_024238569.1 | YhaC family protein | - |
| LPH27_RS03095 (644724) | 644724..645262 | - | 539 | Protein_605 | hypothetical protein | - |
| LPH27_RS03100 (645518) | 645518..645736 | - | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| LPH27_RS03105 (646050) | 646050..646988 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| LPH27_RS03110 (647087) | 647087..648076 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| LPH27_RS03115 (648098) | 648098..649429 | + | 1332 | WP_229266239.1 | threonine/serine transporter TdcC | - |
| LPH27_RS03120 (649455) | 649455..650663 | + | 1209 | WP_001295545.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.008 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.008 |