MGE detailed information
MGE type: Genomic_island MGE length: 11673 bp
Accession: NZ_AP021891 Location: 608059..619731 Organism: Escherichia coli strain 2017.01.04CC Replicon: chromosome
Accession: NZ_AP021891 Location: 608059..619731 Organism: Escherichia coli strain 2017.01.04CC Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VEGS_RS02870 () | 603060..603494 | - | 435 | WP_000948824.1 | PTS sugar transporter subunit IIA | - |
| VEGS_RS02875 () | 603512..604390 | - | 879 | Protein_564 | PTS mannose/fructose/sorbose transporter family subunit IID | - |
| VEGS_RS02880 () | 604380..605159 | - | 780 | WP_000406214.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| VEGS_RS02885 () | 605170..605643 | - | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| VEGS_RS02890 () | 605666..606946 | - | 1281 | WP_000681903.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| VEGS_RS02895 () | 607195..608004 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| VEGS_RS02900 () | 608059..608523 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| VEGS_RS02905 () | 608523..608858 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| VEGS_RS02910 () | 609007..610578 | - | 1572 | WP_001723936.1 | galactarate dehydratase | - |
| VEGS_RS02915 () | 610953..612287 | + | 1335 | WP_001723935.1 | galactarate/glucarate/glycerate transporter GarP | - |
| VEGS_RS02920 () | 612303..613073 | + | 771 | WP_001723934.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| VEGS_RS02925 () | 613103..613993 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| VEGS_RS02930 () | 614090..615235 | + | 1146 | WP_172409704.1 | glycerate 2-kinase | - |
| VEGS_RS02940 () | 616258..617445 | - | 1188 | WP_024238569.1 | YhaC family protein | - |
| VEGS_RS02945 () | 617467..618005 | - | 539 | Protein_577 | hypothetical protein | - |
| VEGS_RS02950 () | 618261..618560 | - | 300 | WP_000248333.1 | transcriptional activator TdcR | - |
| VEGS_RS02955 () | 618793..619731 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| VEGS_RS02960 () | 619830..620819 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| VEGS_RS02965 () | 620841..622172 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| VEGS_RS02970 () | 622198..623406 | + | 1209 | WP_001295545.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.008 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.008 |