MGE detailed information
MGE type: Integron MGE length: 38574 bp
Accession: NZ_AP018677 Location: 1566714..1605287 Organism: Vibrio cholerae strain V060002 Replicon: chromosome
Accession: NZ_AP018677 Location: 1566714..1605287 Organism: Vibrio cholerae strain V060002 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V060002_RS07780 () | 1562309..1562587 | - | 279 | WP_000280319.1 | DUF3709 domain-containing protein | - |
| V060002_RS07785 () | 1562705..1562815 | - | 111 | Protein_1435 | DUF3265 domain-containing protein | - |
| V060002_RS07790 () | 1562812..1563819 | - | 1008 | WP_000093800.1 | DUF4365 domain-containing protein | - |
| V060002_RS07800 () | 1564237..1565414 | + | 1178 | WP_086010879.1 | IS3-like element ISVch4 family transposase | - |
| V060002_RS07805 () | 1565411..1566106 | + | 696 | WP_000213836.1 | hypothetical protein | - |
| V060002_RS07810 () | 1566167..1566673 | - | 507 | WP_001921103.1 | hypothetical protein | - |
| V060002_RS07815 () | 1566714..1567736 | - | 1023 | WP_000954291.1 | hypothetical protein | - |
| V060002_RS07820 () | 1567848..1567988 | - | 141 | WP_001883049.1 | DUF3265 domain-containing protein | - |
| V060002_RS07825 () | 1567954..1568889 | - | 936 | WP_000051985.1 | restriction endonuclease | - |
| V060002_RS07830 () | 1569170..1569769 | - | 600 | WP_000429495.1 | hypothetical protein | - |
| V060002_RS07840 () | 1569924..1570190 | - | 267 | WP_000937852.1 | hypothetical protein | - |
| V060002_RS07850 () | 1570404..1571087 | - | 684 | WP_000877436.1 | hypothetical protein | - |
| V060002_RS07860 () | 1571511..1571603 | - | 93 | WP_014164112.1 | DUF3265 domain-containing protein | - |
| V060002_RS07865 () | 1571625..1572203 | - | 579 | WP_000110120.1 | hypothetical protein | - |
| V060002_RS07875 () | 1572432..1572674 | + | 243 | WP_001107719.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| V060002_RS07880 () | 1572671..1572970 | + | 300 | WP_000802136.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| V060002_RS07885 () | 1573098..1573493 | - | 396 | WP_000870857.1 | DUF3465 domain-containing protein | - |
| V060002_RS07890 () | 1573707..1573886 | - | 180 | WP_001883058.1 | DUF645 family protein | - |
| V060002_RS07905 () | 1574577..1575056 | - | 480 | WP_000009888.1 | lecithin retinol acyltransferase family protein | - |
| V060002_RS07910 () | 1575269..1575892 | - | 624 | WP_000247070.1 | DUF1349 domain-containing protein | - |
| V060002_RS07915 () | 1576098..1576523 | - | 426 | WP_000415750.1 | hypothetical protein | - |
| V060002_RS07920 () | 1576670..1576819 | - | 150 | WP_071908333.1 | DUF3265 domain-containing protein | - |
| V060002_RS07925 () | 1576792..1577043 | - | 252 | WP_001890111.1 | TIGR03643 family protein | - |
| V060002_RS07930 () | 1577238..1577441 | - | 204 | WP_001911580.1 | hypothetical protein | - |
| V060002_RS07935 () | 1577698..1578084 | - | 387 | WP_000703163.1 | VOC family protein | - |
| V060002_RS07940 () | 1578241..1578747 | - | 507 | WP_000393074.1 | hypothetical protein | - |
| V060002_RS07945 () | 1579015..1579287 | - | 273 | WP_119275374.1 | DUF3709 domain-containing protein | - |
| V060002_RS07950 () | 1579354..1579713 | - | 360 | WP_001071541.1 | VOC family protein | - |
| V060002_RS07955 () | 1579866..1580870 | - | 1005 | WP_000964920.1 | LD-carboxypeptidase | - |
| V060002_RS07960 () | 1581086..1581268 | - | 183 | WP_000923182.1 | DUF645 family protein | - |
| V060002_RS19570 () | 1581329..1581457 | - | 129 | WP_071908338.1 | general secretion pathway protein GspI | - |
| V060002_RS07975 () | 1581560..1582354 | - | 795 | WP_001911581.1 | hypothetical protein | - |
| V060002_RS07980 () | 1582450..1582695 | - | 246 | WP_000643598.1 | hypothetical protein | Antitoxin Detail |
| V060002_RS07985 () | 1582682..1582948 | - | 267 | WP_000589156.1 | BrnT family toxin | Toxin Detail |
| V060002_RS07995 () | 1583133..1583795 | - | 663 | WP_000960654.1 | hypothetical protein | - |
| V060002_RS08000 () | 1583923..1584390 | - | 468 | WP_001289288.1 | OsmC family protein | - |
| V060002_RS19520 () | 1584602..1584640 | - | 39 | WP_082798268.1 | hypothetical protein | - |
| V060002_RS19525 () | 1584694..1584837 | - | 144 | Protein_1471 | DUF645 family protein | - |
| V060002_RS08020 () | 1585212..1585490 | - | 279 | WP_000280324.1 | DUF3709 domain-containing protein | - |
| V060002_RS08025 () | 1585742..1585984 | - | 243 | WP_000107461.1 | hypothetical protein | - |
| V060002_RS08030 () | 1586076..1586225 | - | 150 | WP_071908333.1 | DUF3265 domain-containing protein | - |
| V060002_RS08035 () | 1586198..1586449 | - | 252 | WP_001890111.1 | TIGR03643 family protein | - |
| V060002_RS08040 () | 1586644..1587030 | - | 387 | WP_000703163.1 | VOC family protein | - |
| V060002_RS08045 () | 1587020..1587121 | - | 102 | WP_001921603.1 | hypothetical protein | - |
| V060002_RS08050 () | 1587321..1587527 | - | 207 | Protein_1478 | DUF3709 domain-containing protein | - |
| V060002_RS08055 () | 1587779..1588057 | - | 279 | WP_001921601.1 | DUF3709 domain-containing protein | - |
| V060002_RS08065 () | 1588343..1588621 | + | 279 | WP_001258569.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| V060002_RS08070 () | 1588614..1588883 | + | 270 | WP_000277238.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| V060002_RS08075 () | 1589031..1589477 | - | 447 | WP_000006157.1 | hypothetical protein | - |
| V060002_RS08085 () | 1589673..1589711 | - | 39 | WP_106019118.1 | hypothetical protein | - |
| V060002_RS08090 () | 1589727..1589852 | - | 126 | WP_001900195.1 | DUF645 family protein | - |
| V060002_RS08095 () | 1590245..1590517 | + | 273 | WP_000246253.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| V060002_RS08100 () | 1590514..1591011 | + | 498 | WP_000982260.1 | GNAT family N-acetyltransferase | Toxin Detail |
| V060002_RS08105 () | 1591161..1591676 | - | 516 | WP_001201509.1 | lipocalin family protein | - |
| V060002_RS08110 () | 1591813..1592349 | - | 537 | WP_000469482.1 | GNAT family N-acetyltransferase | - |
| V060002_RS08125 () | 1592607..1592888 | - | 282 | WP_001894429.1 | DUF1289 domain-containing protein | - |
| V060002_RS08130 () | 1592837..1592950 | - | 114 | WP_001900214.1 | hypothetical protein | - |
| V060002_RS08135 () | 1593007..1593393 | - | 387 | WP_001015867.1 | NUDIX hydrolase | - |
| V060002_RS08140 () | 1593637..1593879 | + | 243 | WP_000557292.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| V060002_RS08145 () | 1593898..1594215 | + | 318 | WP_001180243.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| V060002_RS08155 () | 1594369..1594707 | - | 339 | WP_000713853.1 | hypothetical protein | - |
| V060002_RS08160 () | 1594865..1595569 | - | 705 | WP_000087610.1 | HNH endonuclease | - |
| V060002_RS08165 () | 1595731..1596939 | - | 1209 | WP_000272282.1 | deoxyguanosinetriphosphate triphosphohydrolase family protein | - |
| V060002_RS08170 () | 1597101..1597778 | - | 678 | WP_000254617.1 | HNH endonuclease | - |
| V060002_RS08180 () | 1597973..1598155 | - | 183 | WP_000923153.1 | DUF645 family protein | - |
| V060002_RS08185 () | 1598509..1598691 | - | 183 | WP_000923340.1 | DUF645 family protein | - |
| V060002_RS08190 () | 1598987..1599364 | - | 378 | WP_000411106.1 | hypothetical protein | - |
| V060002_RS08195 () | 1599569..1599751 | - | 183 | WP_000923334.1 | DUF645 family protein | - |
| V060002_RS08200 () | 1599776..1599955 | - | 180 | WP_001203705.1 | hypothetical protein | - |
| V060002_RS08205 () | 1600053..1600805 | - | 753 | WP_000116045.1 | putative oxidoreductase YgfF | VF |
| V060002_RS08215 () | 1600961..1601590 | - | 630 | WP_001009012.1 | Chloramphenicol acetyltransferase | VF |
| V060002_RS08225 () | 1601741..1602172 | - | 432 | WP_000795498.1 | hypothetical protein | - |
| V060002_RS08230 () | 1602203..1602352 | - | 150 | WP_071908333.1 | DUF3265 domain-containing protein | - |
| V060002_RS08235 () | 1602325..1602576 | - | 252 | WP_001890111.1 | TIGR03643 family protein | - |
| V060002_RS08240 () | 1602832..1603014 | - | 183 | WP_000923182.1 | DUF645 family protein | - |
| V060002_RS08255 () | 1603678..1603845 | - | 168 | WP_001883086.1 | DUF3265 domain-containing protein | - |
| V060002_RS08265 () | 1604325..1605287 | + | 963 | WP_000841995.1 | IS91 family transposase ISAzo26 | Transposase |
| V060002_RS08270 () | 1605369..1605722 | - | 354 | WP_001138366.1 | 50S ribosomal protein L20 | - |
| V060002_RS08275 () | 1605764..1605958 | - | 195 | WP_001885060.1 | 50S ribosomal protein L35 | - |
| V060002_RS08280 () | 1606062..1606613 | - | 552 | WP_001894072.1 | translation initiation factor IF-3 | - |
| V060002_RS08285 () | 1606617..1608545 | - | 1929 | WP_001121779.1 | threonine--tRNA ligase | - |
| V060002_RS19530 () | 1608814..1609041 | - | 228 | WP_001911595.1 | hypothetical protein | - |
| V060002_RS08295 () | 1609166..1609837 | - | 672 | WP_000132861.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|