MGE detailed information
MGE type: Prophage MGE length: 23828 bp
Accession: NC_002947 Location: 4671229..4695056 Organism: Pseudomonas putida KT2440 Replicon: chromosome
Accession: NC_002947 Location: 4671229..4695056 Organism: Pseudomonas putida KT2440 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PP_RS21455 (PP_4129) | 4666235..4668088 | + | 1854 | WP_010954903.1 | NADH-quinone oxidoreductase subunit L | - |
| PP_RS21460 (PP_4130) | 4668129..4669661 | + | 1533 | WP_010954904.1 | NADH-quinone oxidoreductase subunit M | - |
| PP_RS21465 (PP_4131) | 4669669..4671138 | + | 1470 | WP_010954905.1 | NADH-quinone oxidoreductase subunit NuoN | - |
| PP_RS21470 (PP_4132) | 4671229..4671492 | - | 264 | WP_010954906.1 | ogr/Delta-like zinc finger family protein | - |
| PP_RS21475 (PP_4133) | 4671672..4672049 | + | 378 | WP_010954907.1 | helix-turn-helix domain-containing protein | - |
| PP_RS21480 (PP_4134) | 4672046..4672408 | - | 363 | WP_010954908.1 | hypothetical protein | - |
| PP_RS21485 (PP_4135) | 4672401..4672748 | - | 348 | WP_010954909.1 | head completion/stabilization protein | - |
| PP_RS21490 (PP_4136) | 4672760..4673008 | - | 249 | WP_003251454.1 | helix-turn-helix domain-containing protein | - |
| PP_RS21495 (PP_4137) | 4673229..4675301 | + | 2073 | WP_010954910.1 | TonB-dependent receptor | - |
| PP_RS21500 (PP_4138) | 4675405..4675965 | - | 561 | WP_003251456.1 | class I chromate reductase ChrR | - |
| PP_RS21505 (PP_4139) | 4676122..4676340 | + | 219 | WP_010954911.1 | hypothetical protein | - |
| PP_RS21510 (PP_4140) | 4676324..4678573 | - | 2250 | WP_049588234.1 | lysine decarboxylase | - |
| PP_RS21515 (PP_4141) | 4678701..4679459 | - | 759 | WP_010954912.1 | DNA polymerase III subunit epsilon | - |
| PP_RS21520 (PP_4142) | 4679510..4679956 | - | 447 | WP_003251460.1 | ribonuclease HI | - |
| PP_RS21525 (PP_4143) | 4679972..4680745 | - | 774 | WP_003251461.1 | methyltransferase domain-containing protein | - |
| PP_RS21530 (PP_4144) | 4680831..4681610 | + | 780 | WP_010954914.1 | hydroxyacylglutathione hydrolase | - |
| PP_RS21535 (PP_4145) | 4681711..4683141 | + | 1431 | WP_010954915.1 | lytic transglycosylase domain-containing protein | - |
| PP_RS21540 (PP_4146) | 4683362..4685191 | + | 1830 | WP_010954916.1 | extracellular solute-binding protein | - |
| PP_RS21545 (PP_4147) | 4685188..4687023 | + | 1836 | WP_010954917.1 | extracellular solute-binding protein | - |
| PP_RS21550 (PP_4148) | 4687025..4688098 | + | 1074 | WP_010954918.1 | microcin C ABC transporter permease YejB | - |
| PP_RS21555 (PP_4149) | 4688100..4689119 | + | 1020 | WP_010954919.1 | ABC transporter permease | - |
| PP_RS21560 (PP_4150) | 4689121..4690725 | + | 1605 | WP_010954920.1 | ABC transporter ATP-binding protein | - |
| PP_RS21565 (PP_4151) | 4690873..4691340 | + | 468 | WP_049588231.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| PP_RS21570 (PP_4152) | 4691337..4691912 | + | 576 | WP_010954922.1 | PIN domain-containing protein | Toxin Detail |
| PP_RS21575 (PP_4154) | 4692126..4695056 | + | 2931 | WP_049588229.1 | aminotransferase | - |
| PP_RS21580 (PP_4155) | 4695060..4696283 | - | 1224 | WP_010954925.1 | FAD-dependent oxidoreductase | - |
| PP_RS21585 (PP_4156) | 4696374..4697279 | + | 906 | WP_010954926.1 | LysR family transcriptional regulator | - |
| PP_RS21590 (PP_4157) | 4697341..4698036 | - | 696 | WP_010954927.1 | response regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Pseudomonas putida strain A0_F0_I1 | Prophage | TA159237 | NZ_CP054264 | 4671275..4695102 | 0 | |
| Pseudomonas putida strain KT2440 isolate pnCas9-BEC6-C | Prophage | TA245528 | NZ_CP097527 | 4671242..4695069 | 0 | |
| Pseudomonas putida strain KT2440 isolate pMBEC6 | Prophage | TA245537 | NZ_CP097528 | 4671245..4695072 | 0 | |
| Pseudomonas putida strain KT2440 isolate pSEVA631 | Prophage | TA245546 | NZ_CP097529 | 4671091..4694918 | 0 | |
| Pseudomonas putida strain PD689_delTT1 | Prophage | TA267225 | NZ_CP115661 | 4480990..4504817 | 0 | |
| Pseudomonas putida strain PD584 | Prophage | TA267239 | NZ_CP115665 | 4484020..4507847 | 0 | |
| Pseudomonas putida strain NCTC13186 | Prophage | TA287506 | NZ_LR134299 | 1964577..1988404 | 0 |