SecReT4
SecReT4 contains data from 1565 references related to type IV secretion systems (T4SSs). Last Update: Sep 30, 2019

Categories (Literatures contain following contents are categorized)
reviews experimental studies bioinformatics genome sequencing T4SS component T4SS effectors
conjugation DNA uptake and release effector translocation structural study protein interaction other
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Number of references found for the 'structure' category : 140

References
(1) Sen R, Tagore S, De RK (2019). Cluster Quality based Non-Reductional (CQNR) oversampling technique and effector protein predictor based on 3D structure (EPP3D) of proteins. Comput Biol Med. 112:103374. [PudMed:31419629]
(2) Bhogaraju S, Bonn F, Mukherjee R, Adams M, Pfleiderer MM, Galej WP, Matkovic V, Lopez-Mosqueda J, Kalayil S, Shin D, Dikic I (2019). Inhibition of bacterial ubiquitin ligases by SidJ-calmodulin catalysed glutamylation. Nature. 572(7769):382-386. [PudMed:31330532]
(3) Gan N, Zhen X, Liu Y, Xu X, He C, Qiu J, Liu Y, Fujimoto GM, Nakayasu ES, Zhou B, Zhao L, Puvar K, Das C, Ouyang S, Luo ZQ (2019). Regulation of phosphoribosyl ubiquitination by a calmodulin-dependent glutamylase. Nature. 572(7769):387-391. [PudMed:31330531]
(4) Wu X, Zhao Y, Sun L, Jiang M, Wang Q, Wang Q, Yang W, Wu Y (2019). Crystal structure of CagV, the Helicobacter pylori homologue of the T4SS protein VirB8. FEBS J. . [PudMed:31230405]
(5) Chung JM, Sheedlo MJ, Campbell AM, Sawhney N, Frick-Cheng AE, Lacy DB, Cover TL, Ohi MD (2019). Structure of the Helicobacter pylori Cag type IV secretion system. Elife. 8. pii: e47644. [PudMed:31210639]
(6) Rehman S, Li YG, Schmitt A, Lassinantti L, Christie PJ, Berntsson RP (2019). Enterococcal PcfF Is a Ribbon-Helix-Helix Protein That Recruits the Relaxase PcfG Through Binding and Bending of the oriT Sequence. Front Microbiol. 10:958. [PudMed:31134011]
(7) Ghosal D, Jeong KC, Chang YW, Gyore J, Teng L, Gardner A, Vogel JP, Jensen GJ (2019). Molecular architecture, polar targeting and biogenesis of the Legionella Dot/Icm T4SS. Nat Microbiol. 4(7):1173-1182. [PudMed:31011165]
(8) Oikonomou CM, Jensen GJ (2019). Electron Cryotomography of Bacterial Secretion Systems. Microbiol Spectr. 7(2). [PudMed:30953431]
(9) Sgro GG, Costa TRD, Cenens W, Souza DP, Cassago A, Coutinho de Oliveira L, Salinas RK, Portugal RV, Farah CS, Waksman G (2018). Cryo-EM structure of the bacteria-killing type IV secretion system core complex from Xanthomonas citri. Nat Microbiol. 3(12):1429-1440. [PudMed:30349081]
(10) Yuan XY, Wang Y, Wang MY (2018). The type IV secretion system in Helicobacter pylori. Future Microbiol. 13:1041-1054. [PudMed:29927340]
(11) Chetrit D, Hu B, Christie PJ, Roy CR, Liu J (2018). A unique cytoplasmic ATPase complex defines the Legionella pneumophila type IV secretion channel. Nat Microbiol. 3(6):678-686. [PudMed:29784975]
(12) Prevost MS, Waksman G (2018). X-ray crystal structures of the type IVb secretion system DotB ATPases. Protein Sci. 27(8):1464-1475. [PudMed:29770512]
(13) Schmitt A, Jiang K, Camacho MI, Jonna VR, Hofer A, Westerlund F, Christie PJ, Berntsson RP (2018). PrgB promotes aggregation, biofilm formation, and conjugation through DNA binding and compaction. Mol Microbiol. 109(3):291-305. [PudMed:29723434]
(14) Chang YW, Shaffer CL, Rettberg LA, Ghosal D, Jensen GJ (2018). In Vivo Structures of the Helicobacter pylori cag Type IV Secretion System. Cell Rep. 23(3):673-681. [PudMed:29669273]
(15) Grohmann E, Christie PJ, Waksman G, Backert S (2018). Type IV secretion in Gram-negative and Gram-positive bacteria.. Mol Microbiol. 107(4):455-471.. [PudMed:29235173]
(16) Christie PJ, Gomez Valero L, Buchrieser C (2017). Biological Diversity and Evolution of Type IV Secretion Systems. Curr Top Microbiol Immunol. 413:1-30. [PudMed:29536353]
(17) Xu J, Xu D, Wan M, Yin L, Wang X, Wu L, Liu Y, Liu X, Zhou Y, Zhu Y (2017). Structural insights into the roles of the IcmS-IcmW complex in the type IVb secretion system of Legionella pneumophila. Proc Natl Acad Sci U S A. 114(51):13543-13548. [PudMed:29203674]
(18) Bärlocher K, Hutter CAJ, Swart AL, Steiner B, Welin A, Hohl M, Letourneur F, Seeger MA, Hilbi H (2017). Structural insights into Legionella RidL-Vps29 retromer subunit interaction reveal displacement of the regulator TBC1D5. Nat Commun. 8(1):1543. [PudMed:29146912]
(19) Redzej A, Ukleja M, Connery S, Trokter M, Felisberto-Rodrigues C, Cryar A, Thalassinos K, Hayward RD, Orlova EV, Waksman G (2017). Structure of a VirD4 coupling protein bound to a VirB type IV secretion machinery. EMBO J. 36(20):3080-3095. [PudMed:28923826]
(20) Prevost MS, Pinotsis N, Dumoux M, Hayward RD, Waksman G (2017). The Legionella effector WipB is a translocated Ser/Thr phosphatase that targets the host lysosomal nutrient sensing machinery. Sci Rep. 7(1):9450. [PudMed:28842705]
(21) Qiu J, Luo ZQ (2017). Legionella and Coxiella effectors: strength in diversity and activity. Nat Rev Microbiol. 15(10):591-605. [PudMed:28713154]
(22) Ilangovan A, Kay CWM, Roier S, El Mkami H, Salvadori E, Zechner EL, Zanetti G, Waksman G (2017). Cryo-EM Structure of a Relaxase Reveals the Molecular Basis of DNA Unwinding during Bacterial Conjugation. Cell. 169(4):708-721.e12. [PudMed:28457609]
(23) Gordon JE, Costa TRD, Patel RS, Gonzalez-Rivera C, Sarkar MK, Orlova EV, Waksman G, Christie PJ (2017). Use of chimeric type IV secretion systems to define contributions of outer membrane subassemblies for contact-dependent translocation. Mol Microbiol. 105(2):273-293. [PudMed:28452085]
(24) Pinotsis N, Waksman G (2017). Structure of the WipA protein reveals a novel tyrosine protein phosphatase effector from Legionella pneumophila. J Biol Chem. 292(22):9240-9251. [PudMed:28389563]
(25) Ghosal D, Chang YW, Jeong KC, Vogel JP, Jensen GJ (2017). In situ structure of the Legionella Dot/Icm type IV secretion system by electron cryotomography. EMBO Rep. 18(5):726-732. [PudMed:28336774]
(26) Zhang J, Fan F, Zhao Y, Sun L, Liu Y, Keegan RM, Isupov MN, Wu Y (2017). Crystal structure of the type IV secretion system component CagX from Helicobacter pylori. Acta Crystallogr F Struct Biol Commun. 73(Pt 3):167-173. [PudMed:28291753]
(27) Stanger FV, de Beer TAP, Dranow DM, Schirmer T, Phan I, Dehio C (2017). The BID Domain of Type IV Secretion Substrates Forms a Conserved Four-Helix Bundle Topped with a Hook. Structure. 25(1):203-211. [PudMed:27889208]
(28) Urbanus ML, Quaile AT, Stogios PJ, Morar M, Rao C, Di Leo R, Evdokimova E, Lam M, Oatway C, Cuff ME, Osipiuk J, Michalska K, Nocek BP, Taipale M, Savchenko A, Ensminger AW (2016). Diverse mechanisms of metaeffector activity in an intracellular bacterial pathogen, Legionella pneumophila. Mol Syst Biol. 12(12):893. [PudMed:27986836]
(29) Bönig T, Olbermann P, Bats SH, Fischer W, Josenhans C (2016). Systematic site-directed mutagenesis of the Helicobacter pylori CagL protein of the Cag type IV secretion system identifies novel functional domains. Sci Rep. 6:38101. [PudMed:27922023]
(30) Casu B, Smart J, Hancock MA, Smith M, Sygusch J, Baron C (2016). Structural Analysis and Inhibition of TraE from the pKM101 Type IV Secretion System. J Biol Chem. 291(45):23817-23829. [PudMed:27634044]
(31) Sherwood RK, Roy CR (2016). Autophagy Evasion and Endoplasmic Reticulum Subversion: The Yin and Yang of Legionella Intracellular Infection. Annu Rev Microbiol. 70:413-33. [PudMed:27607556]
(32) Oliveira LC, Souza DP, Oka GU, Lima FDS, Oliveira RJ, Favaro DC, Wienk H, Boelens R, Farah CS, Salinas RK (2016). VirB7 and VirB9 Interactions Are Required for the Assembly and Antibacterial Activity of a Type IV Secretion System. Structure. 24(10):1707-1718. [PudMed:27594685]
(33) Gonzalez-Rivera C, Bhatty M, Christie PJ (2016). Mechanism and Function of Type IV Secretion During Infection of the Human Host. Microbiol Spectr. 4(3). [PudMed:27337453]
(34) Beyrakhova KA, van Straaten K, Li L, Boniecki MT, Anderson DH, Cygler M (2016). Structural and Functional Investigations of the Effector Protein LpiR1 from Legionella pneumophila. J Biol Chem. 291(30):15767-77. [PudMed:27226543]
(35) Fercher C, Probst I, Kohler V, Goessweiner-Mohr N, Arends K, Grohmann E, Zangger K, Meyer NH, Keller W (2016). VirB8-like protein TraH is crucial for DNA transfer in Enterococcus faecalis. Sci Rep. 6:24643. [PudMed:27103580]
(36) Frick-Cheng AE, Pyburn TM, Voss BJ, McDonald WH, Ohi MD, Cover TL (2016). Molecular and Structural Analysis of the Helicobacter pylori cag Type IV Secretion System Core Complex. MBio. 7(1):e02001-15. [PudMed:26758182]
(37) Sheedlo MJ, Qiu J, Tan Y, Paul LN, Luo ZQ, Das C (2015). Structural basis of substrate recognition by a bacterial deubiquitinase important for dynamics of phagosome ubiquitination. Proc Natl Acad Sci U S A. 112(49):15090-5. [PudMed:26598703]
(38) Flayhan A, Bergé C, Baïlo N, Doublet P, Bayliss R, Terradot L (2015). The structure of Legionella pneumophila LegK4 type four secretion system (T4SS) effector reveals a novel dimeric eukaryotic-like kinase. Sci Rep. 5:14602. [PudMed:26419332]
(39) Horenkamp FA, Kauffman KJ, Kohler LJ, Sherwood RK, Krueger KP, Shteyn V, Roy CR, Melia TJ, Reinisch KM (2015). The Legionella Anti-autophagy Effector RavZ Targets the Autophagosome via PI3P- and Curvature-Sensing Motifs. Dev Cell. 34(5):569-76. [PudMed:26343456]
(40) Son J, Jo CH, Murugan RN, Bang JK, Hwang KY, Lee WC (2015). Crystal structure of Legionella pneumophila type IV secretion system effector LegAS4. Biochem Biophys Res Commun. 465(4):817-24. [PudMed:26315269]
(41) Quaile AT, Urbanus ML, Stogios PJ, Nocek B, Skarina T, Ensminger AW, Savchenko A (2015). Molecular Characterization of LubX: Functional Divergence of the U-Box Fold by Legionella pneumophila. Structure. 23(8):1459-1469. [PudMed:26146184]
(42) Backert S, Tegtmeyer N, Fischer W (2015). Composition, structure and function of the Helicobacter pylori cag pathogenicity island encoded type IV secretion system. Future Microbiol. 10(6):955-65. [PudMed:26059619]
(43) So EC, Mattheis C, Tate EW, Frankel G, Schroeder GN (2015). Creating a customized intracellular niche: subversion of host cell signaling by Legionella type IV secretion system effectors. Can J Microbiol. 61(9):617-35. [PudMed:26059316]
(44) Kuroda T, Kubori T, Thanh Bui X, Hyakutake A, Uchida Y, Imada K, Nagai H (2015). Molecular and structural analysis of Legionella DotI gives insights into an inner membrane complex essential for type IV secretion. Sci Rep. 5:10912. [PudMed:26039110]
(45) Chandran Darbari V, Waksman G. (2015). Structural Biology of Bacterial Type IV Secretion Systems. Annu Rev Biochem. 84:603-29. [PudMed:26034891]
(46) Kaplan M, Cukkemane A, van Zundert GC, Narasimhan S, Daniëls M, Mance D, Waksman G, Bonvin AM, Fronzes R, Folkers GE, Baldus M (2015). Probing a cell-embedded megadalton protein complex by DNP-supported solid-state NMR. Nat Methods. 12(7):649-52. [PudMed:25984698]
(47) Costa TR, Felisberto-Rodrigues C, Meir A, Prevost MS, Redzej A, Trokter M, Waksman G (2015). Secretion systems in Gram-negative bacteria: structural and mechanistic insights. Nat Rev Microbiol. 13(6):343-59. [PudMed:25978706]
(48) Choi JM, Choi YH, Sudhanva MS, Devakumar S, Lee KH, Cha JH, Lee SH (2015). Crystal structure of CagL from Helicobacter pylori K74 strain. Biochem Biophys Res Commun. 460(4):964-70. [PudMed:25839651]
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(50) Ilangovan A, Connery S, Waksman G. (2015). Structural biology of the Gram-negative bacterial conjugation systems. Trends Microbiol. 23(5):301-10. [PudMed:25825348]
(51) Sohn YS, Shin HC, Park WS, Ge J, Kim CH, Lee BL, Heo WD, Jung JU, Rigden DJ, Oh BH (2015). Lpg0393 of Legionella pneumophila is a guanine-nucleotide exchange factor for Rab5, Rab21 and Rab22. PLoS One. 10(3):e0118683. [PudMed:25821953]
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(53) Weber S, Stirnimann CU, Wieser M, Frey D, Meier R, Engelhardt S, Li X, Capitani G, Kammerer RA, Hilbi H (2014). A type IV translocated Legionella cysteine phytase counteracts intracellular growth restriction by phytate. J Biol Chem. 289(49):34175-88. [PudMed:25339170]
(54) Goessweiner-Mohr N, Eder M, Hofer G, Fercher C, Arends K, Birner-Gruenberger R, Grohmann E, Keller W (2014). Structure of the double-stranded DNA-binding type IV secretion protein TraN from Enterococcus. Acta Crystallogr D Biol Crystallogr. 70(Pt 9):2376-89. [PudMed:25195751]
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