| References |
|
(1) Azam S, Parthasarathy S, Singh C, Kumar S, Siddavattam D (2019). Genome Organization and Adaptive Potential of Archetypal Organophosphate Degrading Sphingobium fuliginis ATCC 27551. Genome Biol Evol. 11(9):2557-2562. [PudMed:31504476]
|
|
(2) Klinges JG, Rosales SM, McMinds R, Shaver EC, Shantz AA, Peters EC, Eitel M, Wörheide G, Sharp KH, Burkepile DE, Silliman BR, Vega Thurber RL (2019). Phylogenetic, genomic, and biogeographic characterization of a novel and ubiquitous marine invertebrate-associated Rickettsiales parasite, Candidatus Aquarickettsia rohweri, gen. nov., sp. nov. ISME J. . [PudMed:31384012]
|
|
(3) Levican A, Ramos-Tapia I, Briceño I, Guerra F, Mena B, Varela C, Porte L (2019). Genomic Analysis of Chilean Strains of Campylobacter jejuni from Human Faeces. Biomed Res Int. 2019:1902732. [PudMed:31360704]
|
|
(4) Yang R, Santos Garcia D, Pérez Montaño F, da Silva GM, Zhao M, Jiménez Guerrero I, Rosenberg T, Chen G, Plaschkes I, Morin S, Walcott R, Burdman S (2019). Complete Assembly of the Genome of an Acidovorax citrulli Strain Reveals a Naturally Occurring Plasmid in This Species. Front Microbiol. 10:1400. [PudMed:31281298]
|
|
(5) Zhang L, Wu Z, Wang X, Tan G, Song J (2019). Insights into the Draft Genome Sequence of the Kiwifruit-Associated Pathogenic Isolate Pseudomonas fluorescens AHK-1. Curr Microbiol. 76(5):552-557. [PudMed:30824950]
|
|
(6) Dias GM, de Sousa Pires A, Grilo VS, Castro MR, de Figueiredo Vilela L, Neves BC (2019). Comparative genomics of Paraburkholderia kururiensis and its potential in bioremediation, biofertilization, and biocontrol of plant pathogens. Microbiologyopen. 8(8):e00801. [PudMed:30811107]
|
|
(7) Singhal K, Mohanty S (2019). Genome organisation and comparative genomics of four novel Wolbachia genome assemblies from Indian Drosophila host. Funct Integr Genomics. 19(4):617-632. [PudMed:30798391]
|
|
(8) Sinha A, Li Z, Sun L, Carlow CKS (2019). Complete Genome Sequence of the Wolbachia wAlbB Endosymbiont of Aedes albopictus. Genome Biol Evol. 11(3):706-720. [PudMed:30715337]
|
|
(9) Sternon JF, Godessart P, Gonçalves de Freitas R, Van der Henst M, Poncin K, Francis N, Willemart K, Christen M, Christen B, Letesson JJ, De Bolle X (2018). Transposon Sequencing of Brucella abortus Uncovers Essential Genes for Growth In Vitro and Inside Macrophages. Infect Immun. 86(8). pii: e00312-18. [PudMed:29844240]
|
|
(10) Bakenhus I, Voget S, Poehlein A, Brinkhoff T, Daniel R, Simon M (2018). Genome sequence of Planktotalea frisia type strain (SH6-1T), a representative of the Roseobacter group isolated from the North Sea during a phytoplankton bloom. Stand Genomic Sci. 13:7. [PudMed:29682168]
|
|
(11) Dias GM, Bidault A, Le Chevalier P, Choquet G, Der Sarkissian C, Orlando L, Medigue C, Barbe V, Mangenot S, Thompson CC, Thompson FL, Jacq A, Pichereau V, Paillard C (2018). Vibrio tapetis Displays an Original Type IV Secretion System in Strains Pathogenic for Bivalve Molluscs. Front Microbiol. 9:227. [PudMed:29515533]
|
|
(12) Zhang YY, Liang ZX, Li CS, Chang Y, Ma XQ, Yu L, Chen LA (2018). Whole-Genome Analysis of an Extensively Drug-Resistant Acinetobacter baumannii Strain XDR-BJ83: Insights into the Mechanisms of Resistance of an ST368 Strain from a Tertiary Care Hospital in China. Microb Drug Resist. 24(9):1259-1270. [PudMed:29489445]
|
|
(13) Timms VJ, Rockett R, Bachmann NL, Martinez E, Wang Q, Chen SC, Jeoffreys N, Howard PJ, Smith A, Adamson S, Gilmour R, Sheppeard V, Sintchenko V (2018). Genome Sequencing Links Persistent Outbreak of Legionellosis in Sydney (New South Wales, Australia) to an Emerging Clone of Legionella pneumophila Sequence Type 211. Appl Environ Microbiol. 84(5). pii: e02020-17. [PudMed:29247056]
|
|
(14) Liu CC, Chen CH, Tang CY, Chen KH, Chen ZF, Chang SH, Tsai CY, Liou ML (2018). Prevalence and comparative analysis of the type IV secretion system in Aggregatibacter actinomycetemcomitan. J Microbiol Immunol Infect. 51(2):278-285. [PudMed:28711435]
|
|
(15) Marasini D, Fakhr MK (2017). Complete Genome Sequences of Campylobacter jejuni Strains Isolated from Retail Chicken and Chicken Gizzards. Genome Announc. 5(47). pii: e01351-17. [PudMed:29167263]
|
|
(16) Megías E, Reis Junior FB, Ribeiro RA, Ollero FJ, Megías M, Hungria M (2017). Genome Sequence of Pantoea ananatis Strain AMG 501, a Plant Growth-Promoting Bacterium Isolated from Rice Leaves Grown in Paddies of Southern Spain. Genome Announc. 5(34). pii: e00848-17. [PudMed:28839029]
|
|
(17) Sultanov RI, Arapidi GP, Vinogradova SV, Govorun VM, Luster DG, Ignatov AN (2016). Comprehensive analysis of draft genomes of two closely related pseudomonas syringae phylogroup 2b strains infecting mono- and dicotyledon host plants. BMC Genomics. 17(Suppl 14):1010. [PudMed:28105943]
|
|
(18) Crovadore J, Calmin G, Chablais R, Cochard B, Schulz T, Lefort F (2016). Whole-Genome Sequence of Bradyrhizobium elkanii Strain UASWS1016, a Potential Symbiotic Biofertilizer for Agriculture. Genome Announc. 4(5). pii: e01095-16. [PudMed:27795259]
|
|
(19) Zheng Q, Liu Y, Jeanthon C, Zhang R, Lin W, Yao J, Jiao N (2016). Geographic Impact on Genomic Divergence as Revealed by
Comparison of Nine Citromicrobial Genomes. Appl Environ Microbiol. 82(24):7205-7216. [PudMed:27736788]
|
|
(20) Sankarasubramanian J, Vishnu US, Gunasekaran P, Rajendhran J (2016). A genome-wide SNP-based phylogenetic analysis distinguishes different biovars of Brucella suis. Infect Genet Evol. 41:213-217. [PudMed:27085292]
|
|
(21) Graaf-van Bloois Lv, Miller WG, Yee E, Gorkiewicz G, Forbes KJ, Zomer AL, Wagenaar JA, Duim B (2016). Campylobacter fetus Subspecies Contain Conserved Type IV Secretion Systems on Multiple Genomic Islands and Plasmids. PLoS One. 11(4):e0152832. [PudMed:27049518]
|
|
(22) Frank J, Dingemanse C, Schmitz AM, Vossen RH, van Ommen GJ, den Dunnen JT, Robanus-Maandag EC, Anvar SY (2016). The Complete Genome Sequence of the Murine Pathobiont Helicobacter typhlonius. Front Microbiol. 6:1549. [PudMed:26779178]
|
|
(23) Scales BS, Erb-Downward JR, Huffnagle IM, LiPuma JJ, Huffnagle GB (2015). Comparative genomics of Pseudomonas fluorescens subclade III strains from human lungs. BMC Genomics. 16:1032. [PudMed:26644001]
|
|
(24) Mohammed M, Cormican M (2015). Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak. BMC Res Notes. 8:728. [PudMed:26613761]
|
|
(25) de Bruijn I, Cheng X, de Jager V, Expósito RG, Watrous J, Patel N, Postma J, Dorrestein PC, Kobayashi D, Raaijmakers JM (2015). Comparative genomics and metabolic profiling of the genus Lysobacter. BMC Genomics. 16:991. [PudMed:26597042]
|
|
(26) Niu XN, Wei ZQ, Zou HF, Xie GG, Wu F, Li KJ, Jiang W, Tang JL, He YQ (2015). Complete sequence and detailed analysis of the first indigenous plasmid from Xanthomonas oryzae pv. oryzicola. BMC Microbiol. 15:233. [PudMed:26498126]
|
|
(27) Greninger AL, Kozyreva V, Truong CL, Longoria R, Chaturvedi V (2015). Draft Genome Sequence of Kerstersia gyiorum CG1, Isolated from a Leg Ulcer. Genome Announc. 3(5). pii: e01036-15. [PudMed:26358603]
|
|
(28) Liu W, Dong H, Li J, Ou Q, Lv Y, Wang X, Xiang Z, He Y, Wu Q (2015). RNA-seq reveals the critical role of OtpR in regulating Brucella melitensis metabolism and virulence under acidic stress. Sci Rep. 5:10864. [PudMed:26242322]
|
|
(29) Dhanani AS, Block G, Dewar K, Forgetta V, Topp E, Beiko RG, Diarra MS (2015). Genomic Comparison of Non-Typhoidal Salmonella enterica Serovars Typhimurium, Enteritidis, Heidelberg, Hadar and Kentucky Isolates from Broiler Chickens. PLoS One. 10(6):e0128773. [PudMed:26083489]
|
|
(30) Soo RM, Woodcroft BJ, Parks DH, Tyson GW, Hugenholtz P (2015). Back from the dead; the curious tale of the predatory cyanobacterium Vampirovibrio chlorellavorus. PeerJ. 3:e968. [PudMed:26038723]
|
|
(31) Liu J, Wei F, Lu Y, Ma T, Zhao J, Gong X, Bao B (2015). Production level of tetrodotoxin in Aeromonas is associated with the copy number of a plasmid. Toxicon. 101:27-34. [PudMed:25911960]
|
|
(32) Li G, Zhang Y, Bi D, Shen P, Ai F, Liu H, Tian Y, Ma Y, Wang B, Rajakumar K, Ou HY, Jiang X (2015). First report of a clinical, multidrug-resistant Enterobacteriaceae isolate coharboring fosfomycin resistance gene fosA3 and carbapenemase gene blaKPC-2 on the same transposon, Tn1721. Antimicrob Agents Chemother. 59(1):338-43. [PudMed:25367902]
|
|
(33) Gomez-Valero L, Rusniok C, Rolando M, Neou M, Dervins-Ravault D, Demirtas J, Rouy Z, Moore RJ, Chen H, Petty NK, Jarraud S, Etienne J, Steinert M, Heuner K, Gribaldo S, Médigue C, Glöckner G, Hartland EL, Buchrieser C (2014). Comparative analyses of Legionella species identifies genetic features of strains causing Legionnaires' disease. Genome Biol. 15(11):505. [PudMed:25370836]
|
|
(34) Ye L, Hildebrand F, Dingemans J, Ballet S, Laus G, Matthijs S, Berendsen R, Cornelis P (2014). Draft genome sequence analysis of a Pseudomonas putida W15Oct28 strain with antagonistic activity to Gram-positive and Pseudomonas sp. pathogens. PLoS One. 9(11):e110038. [PudMed:25369289]
|
|
(35) Fodah RA, Scott JB, Tam HH, Yan P, Pfeffer TL, Bundschuh R, Warawa JM (2014). Correlation of Klebsiella pneumoniae comparative genetic analyses with virulence profiles in a murine respiratory disease model. PLoS One. 9(9):e107394. [PudMed:25203254]
|
|
(36) Marathe NP, Shetty SA, Lanjekar VB, Rasane MH, Ranade DR, Shouche YS (2014). Genome sequencing of multidrug resistant novel Clostridium sp. BL8 reveals its potential for pathogenicity. Gut Pathog. 6:30. [PudMed:25076986]
|
|
(37) Guglielmetti S, Balzaretti S, Taverniti V, Miriani M, Milani C, Scarafoni A, Corona S, Ciranna A, Arioli S, Santala V, Iametti S, Bonomi F, Ventura M, Mora D, Karp M (2014). TgaA, a VirB1-like component belonging to a putative type IV secretion system of Bifidobacterium bifidum MIMBb75. Appl Environ Microbiol. 80(17):5161-9. [PudMed:24951779]
|
|
(38) Wang S, Hao B, Li J, Gu H, Peng J, Xie F, Zhao X, Frech C, Chen N, Ma B, Li Y (2014). Whole-genome sequencing of Mesorhizobium huakuii 7653R provides molecular insights into host specificity and symbiosis island dynamics. BMC Genomics. 15:440. [PudMed:24906389]
|
|
(39) Kondo H, Tinwongger S, Proespraiwong P, Mavichak R, Unajak S, Nozaki R, Hirono I (2014). Draft Genome Sequences of Six Strains of Vibrio parahaemolyticus Isolated from Early Mortality Syndrome/Acute Hepatopancreatic Necrosis Disease Shrimp in Thailand. Genome Announc. 2(2). pii: e00221-14. [PudMed:24723705]
|
|
(40) Sakai Y, Ogawa N, Shimomura Y, Fujii T (2014). A 2,4-dichlorophenoxyacetic acid degradation plasmid pM7012 discloses distribution of an unclassified megaplasmid group across bacterial species. Microbiology. 160(Pt 3):525-36. [PudMed:24440834]
|
|
(41) Elzbieta Brzuszkiewicz, Tino Schulz, Kerstin Rydzewski, Rolf Daniel, Nadine Gillmaier, Christine Dittmann, Gudrun Holland, Eva Schunder, Monika Lautner, Wolfgang Eisenreich, Christian Lück, Klaus Heuner (2013). Legionella oakridgensis ATCC 33761 genome sequence and phenotypic characterization reveals its replication capacity in amoebae. Int J Med Microbiol. 303(8):514-28. [PudMed:23932911]
|
|
(42) Omasits U, Quebatte M, Stekhoven DJ, Fortes C, Roschitzki B, Robinson MD, Dehio C, Ahrens CH (2013). Directed shotgun proteomics guided by saturated RNA-seq identifies a complete expressed prokaryotic proteome. Genome Res. 23(11):1916-27. [PudMed:23878158]
|
|
(43) Balado M, Lemos ML, Osorio CR (2013). Genetic characterization of pPHDP60, a novel conjugative plasmid from the marine fish pathogen Photobacterium damselae subsp. piscicida. Plasmid. 70(1):154-9. [PudMed:23474463]
|
|
(44) Petersen J, Frank O, Göker M, Pradella S (2013). Extrachromosomal, extraordinary and essential--the plasmids of the Roseobacter clade. Appl Microbiol Biotechnol. 97(7):2805-15. [PudMed:23435940]
|
|
(45) Sugawara M, Epstein B, Badgley BD, Unno T, Xu L, Reese J, Gyaneshwar P, Denny R, Mudge J, Bharti AK, Farmer AD, May GD, Woodward JE, Médigue C, Vallenet D, Lajus A, Rouy Z, Martinez-Vaz B, Tiffin P, Young ND, Sadowsky MJ. (2013). Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies. Genome Biol. 14(2):R17. [PudMed:23425606]
|
|
(46) Guy L et al (2012). A genome-wide study of recombination rate variation in Bartonella henselae. BMC Evol Biol. 12(1):65. [PudMed:22577862]
|
|
(47) Nonaka L et al (2012). Novel Conjugative Transferable Multiple Drug Resistance Plasmid pAQU1 from Photobacterium damselae subsp. damselae Isolated from Marine Aquaculture Environment. Microbes Environ. . [PudMed:22446310]
|
|
(48) Woodhams KL et al (2012). Prevalence and detailed mapping of the gonococcal genetic island in Neisseria meningitidis. J Bacteriol. 194(9):2275-85. [PudMed:22366419]
|
|
(49) Hebert L et al (2012). Genomic characterization of the Taylorella genus. PLoS One. 7(1):e29953. [PudMed:22235352]
|
|
(50) Rizzato C et al (2012). Variations in Helicobacter pylori cytotoxin-associated genes and their influence in progression to gastric cancer: implications for prevention. PLoS One. 7(1):e29605. [PudMed:22235308]
|
|
(51) Gillespie JJ et al (2012). A Rickettsia genome overrun by mobile genetic elements provides insight into the acquisition of genes characteristic of an obligate intracellular lifestyle. J Bacteriol. 194(2):376-94. [PudMed:22056929]
|
|
(52) Duan C et al (2011). Complete genome sequence of Rickettsia heilongjiangensis, an emerging tick-transmitted human pathogen. J Bacteriol. 193(19):5564-5. [PudMed:21914880]
|
|
(53) Jalan N et al (2011). Comparative genomic analysis of Xanthomonas axonopodis pv. citrumelo F1, which causes citrus bacterial spot disease, and related strains provides insights into virulence and host specificity. J Bacteriol. 193(22):6342-57. [PudMed:21908674]
|
|
(54) Youssef NH et al (2011). Partial genome assembly for a candidate division OP11 single cell from an anoxic spring (Zodletone Spring, Oklahoma). Appl Environ Microbiol. 77(21):7804-14. [PudMed:21908640]
|
|
(55) Baltrus DA et al (2011). Dynamic evolution of pathogenicity revealed by sequencing and comparative genomics of 19 Pseudomonas syringae isolates. PLoS Pathog. 7(7):e1002132. [PudMed:21799664]
|
|
(56) Collingro A et al (2011). Unity in variety--the pan-genome of the Chlamydiae. Mol Biol Evol. 28(12):3253-70. [PudMed:21690563]
|
|
(57) Vermoote M et al (2011). Genome sequence of Helicobacter suis supports its role in gastric pathology. Vet Res. 42(1):51. [PudMed:21414191]
|
|
(58) Potnis N et al (2011). Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper. BMC Genomics. 12:146. [PudMed:21396108]
|
|
(59) Engel P et al (2011). Parallel evolution of a type IV secretion system in radiating lineages of the host-restricted bacterial pathogen Bartonella. PLoS Genet. 7(2):e1001296. [PudMed:21347280]
|
|
(60) Erauso G et al (2011). Evidence for the role of horizontal transfer in generating pVT1, a large mosaic conjugative plasmid from the clam pathogen, Vibrio tapetis. PLoS One. 6(2):e16759. [PudMed:21326607]
|
|
(61) Oh HM et al (2011). Complete genome sequence of strain HTCC2503T of Parvularcula bermudensis, the type species of the order "Parvularculales" in the class Alphaproteobacteria. J Bacteriol. 193(1):305-6. [PudMed:21037002]
|
|
(62) Schroeder GN et al (2010). Legionella pneumophila strain 130b possesses a unique combination of type IV secretion systems and novel Dot/Icm secretion system effector proteins. J Bacteriol. 192(22):6001-16. [PudMed:20833813]
|
|
(63) Yano H et al (2010). Complete nucleotide sequence of TOL plasmid pDK1 provides evidence for evolutionary history of IncP-7 catabolic plasmids. J Bacteriol. 192(17):4337-47. [PudMed:20581207]
|
|
(64) Remenant B et al (2010). Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence. BMC Genomics. 11:379. [PudMed:20550686]
|
|
(65) Farnbacher M et al (2010). Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8. BMC Genomics. 11:335. [PudMed:20507619]
|
|
(66) Janssen PJ et al (2010). The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments. PLoS One. 5(5):e10433. [PudMed:20463976]
|
|
(67) Green S et al (2010). Comparative genome analysis provides insights into the evolution and adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum. PLoS One. 5(4):e10224. [PudMed:20419105]
|
|
(68) Mane SP et al (2010). Host-interactive genes in Amerindian Helicobacter pylori diverge from their Old World homologs and mediate inflammatory responses. J Bacteriol. 192(12):3078-92. [PudMed:20400544]
|
|
(69) Moreira LM et al (2010). Novel insights into the genomic basis of citrus canker based on the genome sequences of two strains of Xanthomonas fuscans subsp. aurantifolii. BMC Genomics. 11:238. [PudMed:20388224]
|
|
(70) Cazalet C et al (2010). Analysis of the Legionella longbeachae genome and transcriptome uncovers unique strategies to cause Legionnaires' disease. PLoS Genet. 6(2):e1000851. [PudMed:20174605]
|
|
(71) Call DR et al (2010). blaCMY-2-positive IncA/C plasmids from Escherichia coli and Salmonella enterica are a distinct component of a larger lineage of plasmids. Antimicrob Agents Chemother. 54(2):590-6. [PudMed:19949054]
|
|
(72) Wozniak RA et al (2009). Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genet. 5(12):e1000786. [PudMed:20041216]
|
|
(73) Felsheim RF et al (2009). Genome sequence of the endosymbiont Rickettsia peacockii and comparison with virulent Rickettsia rickettsii: identification of virulence factors. PLoS One. 4(12):e8361. [PudMed:20027221]
|
|
(74) Ochi S et al (2009). Nucleotide sequence analysis of the enterotoxigenic Escherichia coli Ent plasmid. DNA Res. 16(5):299-309. [PudMed:19767599]
|
|
(75) Ong CL et al (2009). Conjugative plasmid transfer and adhesion dynamics in an Escherichia coli biofilm. Appl Environ Microbiol. 75(21):6783-91. [PudMed:19717626]
|
|
(76) Lin M et al (2009). Analysis of complete genome sequence of Neorickettsia risticii: causative agent of Potomac horse fever. Nucleic Acids Res. 37(18):6076-91. [PudMed:19661282]
|
|
(77) Duan Y et al (2009). Complete genome sequence of citrus huanglongbing bacterium, 'Candidatus Liberibacter asiaticus' obtained through metagenomics. Mol Plant Microbe Interact. 22(8):1011-20. [PudMed:19589076]
|
|
(78) Berglund EC et al (2009). Run-off replication of host-adaptability genes is associated with gene transfer agents in the genome of mouse-infecting Bartonella grahamii. PLoS Genet. 5(7):e1000546. [PudMed:19578403]
|
|
(79) Champion MD et al (2009). Comparative genomic characterization of Francisella tularensis strains belonging to low and high virulence subspecies. PLoS Pathog. 5(5):e1000459. [PudMed:19478886]
|
|
(80) Moolhuijzen PM et al (2009). Genomic analysis of Campylobacter fetus subspecies: identification of candidate virulence determinants and diagnostic assay targets. BMC Microbiol. 9:86. [PudMed:19422718]
|
|
(81) Beare PA, Unsworth N, Andoh M, Voth DE, Omsland A, Gilk SD, Williams KP, Sobral BW, Kupko JJ 3rd, Porcella SF, Samuel JE, Heinzen RA. (2009). Comparative genomics reveal extensive transposon-mediated genomic plasticity and diversity among potential effector proteins within the genus Coxiella. Infect Immun. 77(2):642-56. [PudMed:19047403]
|
|
(82) Holden MT et al (2009). The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients. J Bacteriol. 191(1):261-77. [PudMed:18931103]
|
|
(83) Hjerde E et al (2008). The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay. BMC Genomics. 0.802777778. [PudMed:19099551]
|
|
(84) Valdes J et al (2008). Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications. BMC Genomics. 0.789583333. [PudMed:19077236]
|
|
(85) Chu C et al (2008). Evolution of genes on the Salmonella Virulence plasmid phylogeny revealed from sequencing of the virulence plasmids of S. enterica serotype Dublin and comparative analysis. Genomics. 92(5):339-43. [PudMed:18718522]
|
|
(86) Chung GT et al (2008). Complete genome sequence of Neisseria gonorrhoeae NCCP11945. J Bacteriol. 190(17):6035-6. [PudMed:18586945]
|
|
(87) Klasson L et al (2008). Genome evolution of Wolbachia strain wPip from the Culex pipiens group. Mol Biol Evol. 25(9):1877-87. [PudMed:18550617]
|
|
(88) Lee KB et al (2008). The genome of the versatile nitrogen fixer Azorhizobium caulinodans ORS571. BMC Genomics. 9:271. [PudMed:18522759]
|
|
(89) Nakayama K et al (2008). The Whole-genome sequencing of the obligate intracellular bacterium Orientia tsutsugamushi revealed massive gene amplification during reductive genome evolution. DNA Res. 15(4):185-99. [PudMed:18508905]
|
|
(90) Norman A et al (2008). Nucleotide sequence of pOLA52: a conjugative IncX1 plasmid from Escherichia coli which enables biofilm formation and multidrug efflux. Plasmid. 60(1):59-74. [PudMed:18440636]
|
|
(91) Iacono M et al (2008). Whole-genome pyrosequencing of an epidemic multidrug-resistant Acinetobacter baumannii strain belonging to the European clone II group. Antimicrob Agents Chemother. 52(7):2616-25. [PudMed:18411315]
|
|
(92) Pearson MM et al (2008). Complete genome sequence of uropathogenic Proteus mirabilis, a master of both adherence and motility. J Bacteriol. 190(11):4027-37. [PudMed:18375554]
|
|
(93) Jerke K et al (2008). Comparative analysis of eight Arthrobacter plasmids. Plasmid. 59(2):73-85. [PudMed:18241920]
|
|
(94) Cytryn EJ et al (2008). Insights learned from pBTAi1, a 229-kb accessory plasmid from Bradyrhizobium sp. strain BTAi1 and prevalence of accessory plasmids in other Bradyrhizobium sp. strains. ISME J. 2(2):158-70. [PudMed:18219284]
|
|
(95) Lee CT et al (2008). A common virulence plasmid in biotype 2 Vibrio vulnificus and its dissemination aided by a conjugal plasmid. J Bacteriol. 190(5):1638-48. [PudMed:18156267]
|
|
(96) Kim MJ et al (2008). Complete DNA sequence and analysis of the transferable multiple-drug resistance plasmids (R Plasmids) from Photobacterium damselae subsp. piscicida isolates collected in Japan and the United States. Antimicrob Agents Chemother. 52(2):606-11. [PudMed:18070959]
|
|
(97) Saenz HL et al (2007). Genomic analysis of Bartonella identifies type IV secretion systems as host adaptability factors. Nat Genet. 39(12):1469-76. [PudMed:18037886]
|
|
(98) Blanc G et al (2007). Lateral gene transfer between obligate intracellular bacteria: evidence from the Rickettsia massiliae genome. Genome Res. 17(11):1657-64. [PudMed:17916642]
|
|
(99) Zahrl D et al (2007). GroEL plays a central role in stress-induced negative regulation of bacterial conjugation by promoting proteolytic degradation of the activator protein TraJ. J Bacteriol. 189(16):5885-94. [PudMed:17586648]
|
|
(100) Chen YT et al (2007). Sequencing and comparative genomic analysis of pK29, a 269-kilobase conjugative plasmid encoding CMY-8 and CTX-M-3 beta-lactamases in Klebsiella pneumoniae. Antimicrob Agents Chemother. 51(8):3004-7. [PudMed:17526756]
|
|
(101) Cho NH et al (2007). The Orientia tsutsugamushi genome reveals massive proliferation of conjugative type IV secretion system and host-cell interaction genes. Proc Natl Acad Sci U S A. 104(19):7981-6. [PudMed:17483455]
|
|
(102) McInerney MJ et al (2007). The genome of Syntrophus aciditrophicus: life at the thermodynamic limit of microbial growth. Proc Natl Acad Sci U S A. 104(18):7600-5. [PudMed:17442750]
|
|
(103) Welch TJ et al (2007). Multiple antimicrobial resistance in plague: an emerging public health risk. PLoS One. 2(3):e309. [PudMed:17375195]
|
|
(104) Smith MG et al (2007). New insights into Acinetobacter baumannii pathogenesis revealed by high-density pyrosequencing and transposon mutagenesis. Genes Dev. 21(5):601-14. [PudMed:17344419]
|
|
(105) El Yacoubi B et al (2007). In planta horizontal transfer of a major pathogenicity effector gene. Appl Environ Microbiol. 73(5):1612-21. [PudMed:17220258]
|
|
(106) Kane SR et al (2007). Whole-genome analysis of the methyl tert-butyl ether-degrading beta-proteobacterium Methylibium petroleiphilum PM1. J Bacteriol. 189(5):1931-45. [PudMed:17158667]
|
|
(107) Rangrez AY et al (2006). Detection of conjugation related type four secretion machinery in Aeromonas culicicola. PLoS One. 1:e115. [PudMed:17205119]
|
|
(108) Pembroke JT et al (2006). A novel ICE in the genome of Shewanella putrefaciens W3-18-1: comparison with the SXT/R391 ICE-like elements. FEMS Microbiol Lett. 264(1):80-8. [PudMed:17020552]
|
|
(109) Johnson TJ et al (2006). Complete DNA sequence, comparative genomics, and prevalence of an IncHI2 plasmid occurring among extraintestinal pathogenic Escherichia coli isolates. Antimicrob Agents Chemother. 50(11):3929-33. [PudMed:16940062]
|
|
(110) Mavromatis K et al (2006). The genome of the obligately intracellular bacterium Ehrlichia canis reveals themes of complex membrane structure and immune evasion strategies. J Bacteriol. 188(11):4015-23. [PudMed:16707693]
|
|
(111) Ogata H et al (2006). Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens. PLoS Genet. 2(5):e76. [PudMed:16703114]
|
|
(112) Frutos R et al (2006). Comparative genomic analysis of three strains of Ehrlichia ruminantium reveals an active process of genome size plasticity. J Bacteriol. 188(7):2533-42. [PudMed:16547041]
|
|
(113) Dunning Hotopp JC et al (2006). Comparative genomics of emerging human ehrlichiosis agents. PLoS Genet. 2(2):e21. [PudMed:16482227]
|
|
(114) Thieme F et al (2005). Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence. J Bacteriol. 187(21):7254-66. [PudMed:16237009]
|
|
(115) Van der Auwera GA et al (2005). Conjugative plasmid pAW63 brings new insights into the genesis of the Bacillus anthracis virulence plasmid pXO2 and of the Bacillus thuringiensis plasmid pBT9727. BMC Genomics. 6:103. [PudMed:16042811]
|
|
(116) Ogata H et al (2005). The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite. PLoS Biol. 3(8):e248. [PudMed:15984913]
|
|
(117) Qian W et al (2005). Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris. Genome Res. 15(6):757-67. [PudMed:15899963]
|
|
(118) Foster J et al (2005). The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic nematode. PLoS Biol. 3(4):e121. [PudMed:15780005]
|
|
(119) Davis RE et al (2005). Cryptic plasmid pSKU146 from the wall-less plant pathogen Spiroplasma kunkelii encodes an adhesin and components of a type IV translocation-related conjugation system. Plasmid. 53(2):179-90. [PudMed:15737404]
|
|
(120) Collins NE et al (2005). The genome of the heartwater agent Ehrlichia ruminantium contains multiple tandem repeats of actively variable copy number. Proc Natl Acad Sci U S A. 102(3):838-43. [PudMed:15637156]
|
|
(121) Brayton KA et al (2005). Complete genome sequencing of Anaplasma marginale reveals that the surface is skewed to two superfamilies of outer membrane proteins. Proc Natl Acad Sci U S A. 102(3):844-9. [PudMed:15618402]
|
|
(122) Rhodes G et al (2004). Complete nucleotide sequence of the conjugative tetracycline resistance plasmid pFBAOT6, a member of a group of IncU plasmids with global ubiquity. Appl Environ Microbiol. 70(12):7497-510. [PudMed:15574953]
|
|
(123) Gilmour MW et al (2004). The complete nucleotide sequence of the resistance plasmid R478: defining the backbone components of incompatibility group H conjugative plasmids through comparative genomics. Plasmid. 52(3):182-202. [PudMed:15518875]
|
|
(124) Batchelor RA et al (2004). Nucleotide sequences and comparison of two large conjugative plasmids from different Campylobacter species. Microbiology. 150(Pt 10):3507-17. [PudMed:15470128]
|
|
(125) Cazalet C et al (2004). Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity. Nat Genet. 36(11):1165-73. [PudMed:15467720]
|
|
(126) Chien M, Morozova I, Shi S, Sheng H, Chen J, Gomez SM, Asamani G, Hill K, Nuara J, Feder M, Rineer J, Greenberg JJ, Steshenko V, Park SH, Zhao B, Teplitskaya E, Edwards JR, Pampou S, Georghiou A, Chou IC, Iannuccilli W, Ulz ME, Kim DH, Geringer-Sameth A, Goldsberry C, Morozov P, Fischer SG, Segal G, Qu X, Rzhetsky A, Zhang P, Cayanis E, De Jong PJ, Ju J, Kalachikov S, Shuman HA, Russo JJ. (2004). The genomic sequence of the accidental pathogen Legionella pneumophila. Science. 305(5692):1966-8. [PudMed:15448271]
|
|
(127) Boyd DA, Tyler S, Christianson S, McGeer A, Muller MP, Willey BM, Bryce E, Gardam M, Nordmann P, Mulvey MR. (2004). Complete nucleotide sequence of a 92-kilobase plasmid harboring the CTX-M-15 extended-spectrum beta-lactamase involved in an outbreak in long-term-care facilities in Toronto, Canada. Antimicrob Agents Chemother. 48(10):3758-64. [PudMed:15388431]
|
|
(128) McLeod MP et al (2004). Complete genome sequence of Rickettsia typhi and comparison with sequences of other rickettsiae. J Bacteriol. 186(17):5842-55. [PudMed:15317790]
|
|
(129) Bell KS et al (2004). Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors. Proc Natl Acad Sci U S A. 101(30):11105-10. [PudMed:15263089]
|
|
(130) Stavrinides J et al (2004). Nucleotide sequence and evolution of the five-plasmid complement of the phytopathogen Pseudomonas syringae pv. maculicola ES4326. J Bacteriol. 186(15):5101-15. [PudMed:15262947]
|
|
(131) Poly F et al (2004). Identification of Campylobacter jejuni ATCC 43431-specific genes by whole microbial genome comparisons. J Bacteriol. 186(14):4781-95. [PudMed:15231810]
|
|
(132) Alsmark CM et al (2004). The louse-borne human pathogen Bartonella quintana is a genomic derivative of the zoonotic agent Bartonella henselae. Proc Natl Acad Sci U S A. 101(26):9716-21. [PudMed:15210978]
|
|
(133) Wu M et al (2004). Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements. PLoS Biol. 2(3):E69. [PudMed:15024419]
|
|
(134) Malek JA et al (2004). Protein interaction mapping on a functional shotgun sequence of Rickettsia sibirica. Nucleic Acids Res. 32(3):1059-64. [PudMed:14872061]
|
|
(135) Chen CY et al (2003). Comparative genome analysis of Vibrio vulnificus, a marine pathogen. Genome Res. 13(12):2577-87. [PudMed:14656965]
|
|
(136) Parkhill J et al (2003). Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica. Nat Genet. 35(1):32-40. [PudMed:12910271]
|
|
(137) Toussaint A et al (2003). The biphenyl- and 4-chlorobiphenyl-catabolic transposon Tn4371, a member of a new family of genomic islands related to IncP and Ti plasmids. Appl Environ Microbiol. 69(8):4837-45. [PudMed:12902278]
|
|
(138) Brassinga AK et al (2003). A 65-kilobase pathogenicity island is unique to Philadelphia-1 strains of Legionella pneumophila. J Bacteriol. 185(15):4630-7. [PudMed:12867476]
|
|
(139) Suerbaum S et al (2003). The complete genome sequence of the carcinogenic bacterium Helicobacter hepaticus. Proc Natl Acad Sci U S A. 100(13):7901-6. [PudMed:12810954]
|
|
(140) Seshadri R, Paulsen IT, Eisen JA, Read TD, Nelson KE, Nelson WC, Ward NL, Tettelin H, Davidsen TM, Beanan MJ, Deboy RT, Daugherty SC, Brinkac LM, Madupu R, Dodson RJ, Khouri HM, Lee KH, Carty HA, Scanlan D, Heinzen RA, Thompson HA, Samuel JE, Fraser CM, Heidelberg JF (2003). Complete genome sequence of the Q-fever pathogen Coxiella burnetii. Proc Natl Acad Sci U S A. 100(9):5455-60. [PudMed:12704232]
|
|
(141) Tun-Garrido C et al (2003). Conjugative transfer of p42a from rhizobium etli CFN42, which is required for mobilization of the symbiotic plasmid, is regulated by quorum sensing. J Bacteriol. 185(5):1681-92. [PudMed:12591886]
|
|
(142) Tauch A et al (2003). The 79,370-bp conjugative plasmid pB4 consists of an IncP-1beta backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance gene pair, the oxacillinase gene bla(NPS-1), and a tripartite antibiotic efflux system of the resistance-nodulation-division family. Mol Genet Genomics. 268(5):570-84. [PudMed:12589432]
|
|
(143) Kaneko T et al (2002). Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110. DNA Res. 9(6):189-97. [PudMed:12597275]
|
|
(144) Greated A et al (2002). Complete sequence of the IncP-9 TOL plasmid pWW0 from Pseudomonas putida. Environ Microbiol. 4(12):856-71. [PudMed:12534468]
|
|
(145) Ajdic D et al (2002). Genome sequence of Streptococcus mutans UA159, a cariogenic dental pathogen. Proc Natl Acad Sci U S A. 99(22):14434-9. [PudMed:12397186]
|
|
(146) Paulsen IT, Seshadri R, Nelson KE, Eisen JA, Heidelberg JF, Read TD, Dodson RJ, Umayam L, Brinkac LM, Beanan MJ, Daugherty SC, Deboy RT, Durkin AS, Kolonay JF, Madupu R, Nelson WC, Ayodeji B, Kraul M, Shetty J, Malek J, Van Aken SE, Riedmuller S, Tettelin H, Gill SR, White O, Salzberg SL, Hoover DL, Lindler LE, Halling SM, Boyle SM, Fraser CM (2002). The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts. Proc Natl Acad Sci U S A. 99(20):13148-53. [PudMed:12271122]
|
|
(147) Kroll JS et al (2002). Characterisation and genetic organisation of a 24-MDa plasmid from the Brazilian Purpuric Fever clone of Haemophilus influenzae biogroup aegyptius. Plasmid. 48(1):38-48. [PudMed:12206754]
|
|
(148) Tauch A et al (2002). The complete nucleotide sequence and environmental distribution of the cryptic, conjugative, broad-host-range plasmid pIPO2 isolated from bacteria of the wheat rhizosphere. Microbiology. 148(Pt 6):1637-53. [PudMed:12055285]
|
|
(149) Meidanis J et al (2002). Whole-genome analysis of transporters in the plant pathogen Xylella fastidiosa. Microbiol Mol Biol Rev. 66(2):272-99. [PudMed:12040127]
|
|
(150) Murata T et al (2002). Complete nucleotide sequence of plasmid Rts1: implications for evolution of large plasmid genomes. J Bacteriol. 184(12):3194-202. [PudMed:12029035]
|
|
(151) da Silva AC et al (2002). Comparison of the genomes of two Xanthomonas pathogens with differing host specificities. Nature. 417(6887):459-63. [PudMed:12024217]
|
|
(152) Sullivan JT et al (2002). Comparative sequence analysis of the symbiosis island of Mesorhizobium loti strain R7A. J Bacteriol. 184(11):3086-95. [PudMed:12003951]
|
|
(153) DelVecchio VG, Kapatral V, Redkar RJ, Patra G, Mujer C, Los T, Ivanova N, Anderson I, Bhattacharyya A, Lykidis A, Reznik G, Jablonski L, Larsen N, D'Souza M, Bernal A, Mazur M, Goltsman E, Selkov E, Elzer PH, Hagius S, O'Callaghan D, Letesson JJ, Haselkorn R, Kyrpides N, Overbeek R. (2002). The genome sequence of the facultative intracellular pathogen Brucella melitensis. Proc Natl Acad Sci U S A. 99(1):443-8. [PudMed:11756688]
|
|
(154) Schneiker S et al (2001). The genetic organization and evolution of the broad host range mercury resistance plasmid pSB102 isolated from a microbial population residing in the rhizosphere of alfalfa. Nucleic Acids Res. 29(24):5169-81. [PudMed:11812851]
|
|
(155) Schwarz FV et al (2001). Sequence of the 50-kb conjugative multiresistance plasmid pRE25 from Enterococcus faecalis RE25. Plasmid. 46(3):170-87. [PudMed:11735367]
|
|
(156) Parkhill J et al (2001). Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18. Nature. 413(6858):848-52. [PudMed:11677608]
|
|
(157) Hattori Y et al (2001). Sequence characterization of the vir region of a nopaline type Ti plasmid, pTi-SAKURA. Genes Genet Syst. 76(2):121-30. [PudMed:11434457]
|
|
(158) Kuroda M et al (2001). Whole genome sequencing of meticillin-resistant Staphylococcus aureus. Lancet. 357(9264):1225-40. [PudMed:11418146]
|
|
(159) Moriguchi K et al (2001). The complete nucleotide sequence of a plant root-inducing (Ri) plasmid indicates its chimeric structure and evolutionary relationship between tumor-inducing (Ti) and symbiotic (Sym) plasmids in Rhizobiaceae. J Mol Biol. 307(3):771-84. [PudMed:11273700]
|
|
(160) Galli DM et al (2001). Nucleotide sequence and analysis of conjugative plasmid pVT745. J Bacteriol. 183(5):1585-94. [PudMed:11160089]
|
|
(161) Sanchez DO et al (2001). Gene discovery through genomic sequencing of Brucella abortus. Infect Immun. 69(2):865-8. [PudMed:11159979]
|
|
(162) Kaneko T et al (2000). Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti. DNA Res. 7(6):331-8. [PudMed:11214968]
|
|
(163) Sherburne CK et al (2000). The complete DNA sequence and analysis of R27, a large IncHI plasmid from Salmonella typhi that is temperature sensitive for transfer. Nucleic Acids Res. 28(10):2177-86. [PudMed:10773089]
|
|
(164) Suzuki K et al (2000). Complete nucleotide sequence of a plant tumor-inducing Ti plasmid. Gene. 242(1-2):331-6. [PudMed:10721727]
|
|
(165) Romine MF et al (1999). Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199. J Bacteriol. 181(5):1585-602. [PudMed:10049392]
|
|
(166) Thorsted PB et al (1998). Complete sequence of the IncPbeta plasmid R751: implications for evolution and organisation of the IncP backbone. J Mol Biol. 282(5):969-90. [PudMed:9753548]
|
|
(167) Cole ST, Brosch R, Parkhill J, Garnier T, Churcher C, Harris D, Gordon SV, Eiglmeier K, Gas S, Barry CE 3rd, Tekaia F, Badcock K, Basham D, Brown D, Chillingworth T, Connor R, Davies R, Devlin K, Feltwell T, Gentles S, Hamlin N, Holroyd S, Hornsby T, Jagels K, Krogh A, McLean J, Moule S, Murphy L, Oliver K, Osborne J, Quail MA, Rajandream MA, Rogers J, Rutter S, Seeger K, Skelton J, Squares R, Squares S, Sulston JE, Taylor K, Whitehead S, Barrell BG (1998). Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature. 393(6685):537-44. [PudMed:9634230]
|
|
(168) Suzuki K et al (1998). Novel structural difference between nopaline- and octopine-type trbJ genes: construction of genetic and physical map and sequencing of trb/traI and rep gene clusters of a new Ti plasmid pTi-SAKURA. Biochim Biophys Acta. 1396(1):1-7. [PudMed:9524202]
|
|
(169) Suzuki K et al (1997). Genome structure of pTi-SAKURA (II): genetic map constructed by complete DNA sequencing. Nucleic Acids Symp Ser. (37):161-2. [PudMed:9586049]
|
|
(170) Kim SR et al (1993). Nucleotide sequence and characterization of the traABCD region of IncI1 plasmid R64. J Bacteriol. 175(16):5035-42. [PudMed:8349545]
|
