SecReT4

T4SS
References

T4SS ID	474
Strain	Roseobacter denitrificans OCh 114
Replicon	plasmid pTB1 [Browse all T4SS(s) in this replicon]
Accession	NC_008386
Location	7740..17629; 104010..106175
Name	VirB
Function	conjugation
Classification	Type IVA; Type P
This T4SS has been mentioned in a genome sequencing report.

T4SS components

Component	VirB1	VirB2	VirB3	VirB4	VirB5	VirB6	VirB7	VirB8	VirB9
Number	1	1	1	1	1	1	0	1	1
Component	VirB10	VirB11	VirD4
Number	1	1	1

The information of T4SS components from NC_008386
Region 1: 7740..17629

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	RD1_A0003	3317..3451 [-], 135	115345533	hypothetical protein
2	RD1_A0004 (opuD)	3438..4949 [-], 1512	115345534	glycine betaine transporter
3	RD1_A0005	5140..6174 [-], 1035	115345535	integrase catalytic subunit
4	RD1_A0006	6349..7359 [-], 1011	115345536	hypothetical protein
5	RD1_A0007 (virB11)	7740..8723 [-], 984	115345537	type IV secretory pathway, VirB11 component, putative	VirB11
6	RD1_A0008	8720..10051 [-], 1332	115345538	putative VirB10 protein	VirB10
7	RD1_A0009	10051..10806 [-], 756	115345539	putative VirB9 protein	VirB9
8	RD1_A0010	10806..11480 [-], 675	115345540	VirB8 protein	VirB8
9	RD1_A0011	11544..12716 [-], 1173	115345541	putative conjugal transfer protein	VirB6
10	RD1_A0012	12720..13175 [-], 456	115345542	hypothetical protein
11	RD1_A0013	13178..13888 [-], 711	115345543	RC163, putative	VirB5
12	RD1_A0014 (virB4)	14019..16379 [-], 2361	115345544	VirB4 protein, putative	VirB4
13	RD1_A0015	16372..16647 [-], 276	115345545	type IV secretion system protein, putative	VirB3
14	RD1_A0016	16650..16931 [-], 282	115345546	hypothetical protein	VirB2
15	RD1_A0017	16919..17629 [-], 711	115345547	transglycosylase, putative	VirB1
16	RD1_A0018	17608..18087 [-], 480	115345548	hypothetical protein
17	RD1_A0019	19212..19340 [-], 129	115345549	hypothetical protein
18	RD1_A0021	19963..21318 [+], 1356	115345550	RC102
19	RD1_A0023	21315..22337 [+], 1023	115345551	RC101

Region 2: 104010..106175

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	RD1_A0108	99308..99955 [-], 648	115345630	hypothetical protein
2	RD1_A0109 (virC1)	99942..100655 [-], 714	115345631	putative crown gall tumor protein VirC1
3	RD1_A0110	100818..100955 [+], 138	115345632	hypothetical protein
4	RD1_A0111 (virD1)	101221..101655 [+], 435	115345633	type IV secretion system T-DNA border endonuclease VirD1
5	RD1_A0112 (virD2)	101856..104000 [+], 2145	115345634	VirD2 protein
6	RD1_A0114	104010..106175 [+], 2166	115345635	type IV secretion system protein VirD4	VirD4

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

(1) Swingley WD; Sadekar S; Mastrian SD; Matthies HJ; Hao J; Ramos H; Acharya CR; Conrad AL; Taylor HL; Dejesa LC; Shah MK; O'huallachain ME; Lince MT; Blankenship RE; Beatty JT; Touchman JW (2007). The complete genome sequence of Roseobacter denitrificans reveals a mixotrophic rather than photosynthetic metabolism. J Bacteriol. 189(3):683-90. [PudMed:17098896]