| Protein ID: 115345635 |
 T4SS name [ID] | VirB [474] |
| Gene symbol | - |
| Locus tag | RD1_A0114 |
| Strain | Roseobacter denitrificans OCh 114 |
| Replicon | plasmid pTB1 [GenBank: NC_008386] [Browse all T4SS(s) in this replicon] |
| Location [Strand] | 104010..106175 [+] |
| Product | type IV secretion system protein VirD4 |
| Component type | VirD4 |
| UniProt ID | Q07GJ0 |
| KEGG ID | rde:RD1_A0114 |
| PDB ID | NA |
| Domain hit(s) vs Pfam | T4SS-DNA_transf [PF02534], Evalue: 4.7e-106, Aligned region: 95..535 TraG-D_C [PF12696], Evalue: 6.9e-31, Aligned region: 388..505 TrwB_AAD_bind [PF10412], Evalue: 1.1e-26, Aligned region: 134..519 AAA_10 [PF12846], Evalue: 1e-09, Aligned region: 138..463 |
| Protein Sequence: 721 a.a. [Download] |
| >gi|115345635|ref|YP_771817.1| virD4 protein, putative [Roseobacter denitrificans OCh 114] MNKTTADVLVFAGVGAIVGSVPALVAAGACALWLSGLSITTVELDTLLYFAPWITGSIEPFKTAALAGGA VWLVSVIAAVAIGYRPQLASHGSARWAEERDLKKAGLVAPLAEVQGPVFAKFGSPNKRRAYLTSTEIPHS LIAAPTGSGKGIGIVIPTLLTYNGSVVCLDVKGENFETTSRHRAAMGDAVFKFAPYDKDGRTHRYNPIDI VTHVADRRRFTEARRLASSLIIAKSKSAEGFLEGAREIFAASVVYAIEQETPTIAAVHDLISQHGQAHSN FETMAAKAQAPEAVSIFNRMASTDIRTLSAYLSVLSDGGLSLWADPAVRDATAQSDFTFTNLRRQPASIY FVVGPNDLDPLSSLIRLMFQQAVAITQREMPKADEPFPVLFLLDEFASLGRMDALSQAITTLRGYGGRLM IIVQSLSNLQIYGQDGAQNFLANCRLQLFMAPADKDTPDYISRAIGDFTRRARSKSWQTNDFMKSNVQER EEGARLIRPEELRKLGEDTIVALIQNQDPVRTDKVKYYEDKELCPIFEAQTGPLPEPPSLFEGDEADTRI RLFVAAHDPGLIDDTEARRKHLPAPDPSSTKEAPAKVILLPPPDAPASPPPSEPDYDASTRKDVGPTQPT PAPVATETTNSVPKPLSKRMRAIARAKAASKARSLDEDMDEDLEAAAVQDLKDHLTTHSPVQRAIEKARL RAEVNWPDAYGDNKPLRKRGA |
| Nucleotide Sequence: 2166 bp [Download] |
| >gi|115345530|ref|NC_008386.1|:104010-106175 Roseobacter denitrificans plasmid pTB1, complete sequence ATGAACAAAACCACCGCAGATGTTCTCGTCTTCGCCGGCGTCGGCGCTATTGTCGGGTCGGTCCCGGCCC TTGTTGCCGCCGGGGCCTGTGCGCTGTGGCTTTCCGGCCTGAGCATCACAACCGTTGAGCTGGACACGCT TCTCTATTTTGCGCCCTGGATCACCGGCAGCATTGAACCTTTCAAGACCGCCGCGCTCGCGGGTGGTGCT GTCTGGCTGGTGTCCGTTATAGCCGCCGTCGCCATCGGCTATCGTCCCCAGCTAGCCAGTCACGGATCTG CGCGGTGGGCCGAGGAACGGGACTTGAAGAAGGCGGGCCTGGTGGCCCCGCTCGCGGAGGTGCAGGGACC GGTATTCGCGAAGTTCGGGTCGCCCAACAAAAGACGCGCCTATCTGACATCCACCGAGATTCCGCATAGC CTCATTGCAGCACCAACAGGCTCGGGCAAGGGCATCGGGATCGTGATCCCAACTCTTCTGACCTACAACG GGTCCGTGGTCTGTCTGGACGTCAAGGGCGAGAACTTTGAGACAACGTCGCGGCACCGGGCCGCAATGGG TGATGCGGTGTTCAAGTTTGCGCCCTATGACAAAGACGGGCGCACCCATCGCTACAACCCGATTGACATC GTGACACATGTGGCGGATCGGCGGCGTTTCACAGAGGCGCGCCGCCTTGCATCCAGCCTTATCATTGCAA AATCCAAAAGTGCCGAAGGCTTTCTGGAAGGGGCCAGAGAGATTTTTGCGGCCTCCGTGGTGTACGCAAT CGAGCAGGAGACCCCGACGATTGCCGCCGTGCACGACCTGATATCGCAGCACGGACAGGCGCACTCGAAC TTCGAGACAATGGCGGCCAAGGCTCAGGCGCCCGAAGCGGTGTCGATCTTCAACCGGATGGCCTCGACCG ACATCCGGACGCTGAGCGCCTATTTGTCAGTGTTGTCGGATGGCGGCCTGAGCCTTTGGGCCGACCCGGC GGTGCGGGATGCGACCGCGCAGTCCGATTTTACCTTCACCAATCTGCGACGTCAGCCTGCGTCGATTTAT TTTGTTGTCGGCCCGAATGATTTGGACCCGCTGTCGTCGCTCATTCGCCTCATGTTCCAGCAAGCGGTTG CCATCACGCAGCGGGAAATGCCGAAAGCGGATGAGCCGTTCCCGGTTTTGTTTCTCTTGGATGAATTTGC CTCCCTCGGGCGCATGGATGCTTTGAGCCAGGCCATCACCACGTTACGAGGATACGGCGGGCGCTTGATG ATCATTGTTCAATCGCTGTCGAACTTGCAGATTTACGGGCAGGACGGTGCGCAGAATTTCCTCGCAAACT GCCGCCTTCAGCTTTTCATGGCCCCGGCGGACAAGGACACGCCGGATTATATCTCGCGCGCGATCGGTGA TTTCACCCGCAGGGCGCGCAGTAAATCATGGCAGACCAATGACTTCATGAAGTCCAACGTGCAGGAGCGC GAAGAAGGGGCCAGGCTCATTCGGCCCGAGGAACTGCGTAAATTGGGCGAGGACACGATTGTTGCGCTGA TCCAGAACCAGGACCCGGTACGCACCGACAAGGTGAAATACTACGAAGACAAGGAGCTGTGCCCGATCTT TGAAGCACAGACCGGCCCGCTGCCAGAGCCTCCCAGCCTCTTTGAGGGCGACGAAGCAGATACACGTATA CGTCTATTCGTGGCGGCACATGATCCCGGCCTCATTGACGACACAGAGGCGCGTCGCAAGCACCTTCCTG CACCCGACCCGTCCAGCACCAAAGAAGCGCCAGCCAAGGTCATATTGCTACCACCTCCGGACGCACCAGC ATCACCGCCACCGTCTGAACCAGATTACGATGCGTCGACCAGAAAGGATGTGGGGCCAACCCAGCCCACA CCGGCACCGGTGGCAACAGAAACCACAAACAGCGTACCGAAACCACTGTCCAAACGCATGCGCGCGATTG CACGTGCAAAAGCAGCATCCAAAGCAAGAAGTCTCGACGAAGACATGGATGAAGATCTGGAAGCCGCCGC CGTACAGGATTTGAAGGACCACCTGACAACGCATTCGCCGGTGCAGCGAGCGATTGAAAAAGCGCGCCTT CGCGCCGAGGTAAACTGGCCAGATGCTTATGGCGACAATAAACCTTTGCGGAAACGGGGCGCGTGA |