SecReT4

T4SS
References

T4SS ID	471
Strain	Sinorhizobium medicae WSM419
Replicon	plasmid pSMED03 [Browse all T4SS(s) in this replicon]
Accession	NC_009622
Location	56661..69439
Name	VirB
Function	NA
Classification	Type IVA; Type P
This T4SS is identified in this study.

T4SS components

Component	VirB1	VirB2	VirB3	VirB4	VirB5	VirB6	VirB7	VirB8	VirB9
Number	2	1	1	1	1	1	0	1	1
Component	VirB10	VirB11	VirD4
Number	1	1	1

The information of T4SS components from NC_009622

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Smed_6392	52465..53127 [+], 663	150378311	hypothetical protein
2	Smed_6393	53195..53803 [+], 609	150378312	hypothetical protein
3	Smed_6394	53870..55345 [-], 1476	150378313	hypothetical protein
4	Smed_6396	56661..58760 [-], 2100	150378314	TRAG family protein	VirD4
5	Smed_6397	58757..59785 [-], 1029	150378315	P-type DNA transfer ATPase VirB11	VirB11
6	Smed_6398	59766..60977 [-], 1212	150378316	conjugation TrbI family protein	VirB10
7	Smed_6399	60977..61786 [-], 810	150378317	P-type conjugative transfer protein VirB9	VirB9
8	Smed_6400	61783..62478 [-], 696	150378318	VirB8 family protein	VirB8
9	Smed_6401	62504..63532 [-], 1029	150378319	TrbL/VirB6 plasmid conjugal transfer protein	VirB6
10	Smed_6402	63548..63775 [-], 228	150378320	hypothetical protein
11	Smed_6403	63765..64466 [-], 702	150378321	conjugal transfer protein	VirB5
12	Smed_6404	64478..65566 [-], 1089	150378322	lytic transglycosylase catalytic	VirB1
13	Smed_6405	65563..68022 [-], 2460	150378323	type IV secretion/conjugal transfer ATPase	VirB4
14	Smed_6406	68025..68324 [-], 300	150378324	type IV secretory pathway VirB3 family protein	VirB3
15	Smed_6407	68328..68666 [-], 339	150378325	VIRB2 type IV secretion fmaily protein	VirB2
16	Smed_6408	68678..69439 [-], 762	150378326	lytic transglycosylase catalytic	VirB1
17	Smed_6409	69812..70420 [+], 609	150378327	hypothetical protein
18	Smed_6410	70417..70953 [+], 537	150378328	succinoglycan biosynthesis protein ExoI-like protein
19	Smed_6411	70950..71651 [+], 702	150378329	nuclease
20	Smed_6412	71652..72050 [+], 399	150378330	hypothetical protein
21	Smed_6413	72052..72648 [+], 597	150378331	hypothetical protein
22	Smed_6414	72669..73085 [+], 417	150378332	hypothetical protein
23	Smed_6415	73168..73515 [-], 348	150378333	hypothetical protein
24	Smed_6416	73981..74157 [-], 177	150378334	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

Identified as part of this study from NC_009622