SecReT4

T4SS
Conjugation and Effectors
References

T4SS ID	14
Strain	Agrobacterium vitis S4
Replicon	plasmid pTiS4 [Browse all T4SS(s) in this replicon]
Accession	NC_011982
Location	150781..169232
Name	VirB
Function	effector translocation and conjugation
Classification	Type IVA; Type P
This T4SS is identified in this study.

T4SS components

Component	VirB1	VirB2	VirB3	VirB4	VirB5	VirB6	VirB7	VirB8	VirB9
Number	1	1	1	1	1	1	1	1	1
Component	VirB10	VirB11	VirD4
Number	1	1	1

The information of T4SS components from NC_011982

#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Component
1	Avi_8208 (virD5)	148205..150673 [-], 2469	222080231	virA/G regulated protein
2	Avi_8210 (virD4)	150781..152772 [-], 1992	222080232	type IV secretion system protein VirD4	VirD4
3	Avi_8211 (virD3)	152830..155502 [-], 2673	222080233	virA/G regulated protein
4	Avi_8212 (virD2)	155516..156727 [-], 1212	222080234	type IV secretion system T-DNA border endonuclease VirD2
5	Avi_8213 (virD1)	156754..157200 [-], 447	222080235	type IV secretion system T-DNA border endonuclease VirD1
6	Avi_8214 (virC1)	157457..158152 [+], 696	222080236	putative crown gall tumor protein VirC1
7	Avi_8215 (virC2)	158149..158763 [+], 615	222080237	putative crown gall tumor protein VirC2
8	Avi_8217 (virG)	158885..159610 [-], 726	222080238	two-component response regulator VirG
9	Avi_8218 (virB11)	159841..160875 [-], 1035	222080239	type IV secretion system protein VirB11	VirB11
10	Avi_8219 (virB10)	160909..162030 [-], 1122	222080240	type IV secretion system protein VirB10	VirB10
11	Avi_8220 (virB9)	162030..162908 [-], 879	222080241	type IV secretion system protein VirB9	VirB9
12	Avi_8221 (virB8)	162905..163618 [-], 714	222080242	type IV secretion system protein VirB8	VirB8
13	Avi_8336 (virB7)	163605..163772 [-], 168	222080322	type IV secretion system lipoprotein VirB7	VirB7
14	Avi_8222 (virB6)	163800..164687 [-], 888	222080243	type IV secretion system protein VirB6	VirB6
15	Avi_8223 (virB5)	164747..165415 [-], 669	222080244	type IV secretion system protein VirB5	VirB5
16	Avi_8224 (virB4)	165443..167812 [-], 2370	222080245	type IV secretion system protein VirB4	VirB4
17	Avi_8225 (virB3)	167812..168138 [-], 327	222080246	type IV secretion system protein VirB3	VirB3
18	Avi_8226 (virB2)	168135..168500 [-], 366	222080247	type IV secretion system pilin subunit VirB2	VirB2
19	Avi_8227 (virB1)	168516..169232 [-], 717	222080248	type IV secretion system lytic transglycosylase VirB1	VirB1
20	Avi_8230	170524..170877 [+], 354	222080249	transposase
21	Avi_8231	170939..172600 [+], 1662	222080250	transposase
22	Avi_8233	172907..173212 [-], 306	222080251	hypothetical protein

Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files

Proteins Genes

This system delivers both DNA and proteins into plant cell. The transferred DNA (T-DNA) region: NC_011982: 136795..140056)

Effectors

VirD5, VirD2, VirE3, VirE2

The information of protein effectors
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	*
1	Avi_8208 (virD5)	148205..150673 [-], 2469	222080231	virA/G regulated protein	VirD5
2	Avi_8212 (virD2)	155516..156727 [-], 1212	222080234	type IV secretion system T-DNA border endonuclease VirD2	VirD2
3	Avi_8242 (virE3)	175275..177296 [-], 2022	222080254	virA/G regulated protein	VirE3
4	Avi_8243 (virE2)	177363..179033 [-], 1671	222080255	type IV secretion system single-stranded DNA binding protein VirE2	VirE2

Download FASTA format files

Proteins Genes

Identified as part of this study from NC_011982