Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG/cglG   Type   Machinery gene
Locus tag   EL079_RS08830 Genome accession   NZ_LR134283
Coordinates   1770065..1770391 (+) Length   108 a.a.
NCBI ID   WP_018543596.1    Uniprot ID   -
Organism   Streptococcus anginosus strain NCTC10713     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1765065..1775391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL079_RS08795 (NCTC10713_01799) - 1766356..1766721 (+) 366 WP_003032307.1 DUF1033 family protein -
  EL079_RS08800 (NCTC10713_01800) comGA 1766791..1767732 (+) 942 WP_003032308.1 competence type IV pilus ATPase ComGA Machinery gene
  EL079_RS08805 (NCTC10713_01801) comGB 1767674..1768696 (+) 1023 WP_037582505.1 competence type IV pilus assembly protein ComGB Machinery gene
  EL079_RS08810 (NCTC10713_01802) comGC 1768693..1769010 (+) 318 WP_003026997.1 competence type IV pilus major pilin ComGC Machinery gene
  EL079_RS08815 (NCTC10713_01803) comGD 1768970..1769398 (+) 429 WP_050791305.1 competence type IV pilus minor pilin ComGD Machinery gene
  EL079_RS08820 (NCTC10713_01804) comGE/cglE 1769370..1769663 (+) 294 WP_003032294.1 competence type IV pilus minor pilin ComGE Machinery gene
  EL079_RS08825 (NCTC10713_01805) comGF/cglF 1769647..1770084 (+) 438 WP_003032293.1 competence type IV pilus minor pilin ComGF Machinery gene
  EL079_RS08830 (NCTC10713_01806) comGG/cglG 1770065..1770391 (+) 327 WP_018543596.1 competence type IV pilus minor pilin ComGG Machinery gene
  EL079_RS08835 (NCTC10713_01807) comGH 1770476..1771429 (+) 954 WP_003032282.1 class I SAM-dependent methyltransferase Machinery gene
  EL079_RS08840 (NCTC10713_01808) - 1771476..1772675 (+) 1200 WP_003032291.1 acetate kinase -
  EL079_RS08845 (NCTC10713_01809) glmS 1773064..1774878 (+) 1815 WP_022524764.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12701.68 Da        Isoelectric Point: 10.6290

>NTDB_id=999961 EL079_RS08830 WP_018543596.1 1770065..1770391(+) (comGG/cglG) [Streptococcus anginosus strain NCTC10713]
MWKQRVKAGIMLYALFITAVFSLLLQFYLHRQTANHRNFALNKEGTQAYTMALLANKNSKQREFDKGHVQDQKSEKELIL
TVTMKTGRRYQFSFPLEKTSQNNDKLDK

Nucleotide


Download         Length: 327 bp        

>NTDB_id=999961 EL079_RS08830 WP_018543596.1 1770065..1770391(+) (comGG/cglG) [Streptococcus anginosus strain NCTC10713]
GTGTGGAAACAAAGAGTTAAAGCAGGTATTATGCTCTATGCCCTTTTTATAACAGCTGTCTTTAGCTTGCTTTTGCAATT
TTACCTTCATCGGCAAACTGCTAATCACAGGAATTTTGCTTTGAACAAAGAAGGAACACAGGCTTATACAATGGCTCTTC
TAGCAAATAAAAATTCTAAGCAAAGAGAATTTGATAAAGGGCATGTCCAAGACCAAAAGAGTGAGAAAGAGCTCATCCTG
ACCGTAACAATGAAGACTGGTCGCCGTTATCAATTTTCTTTTCCGCTTGAGAAGACCAGCCAAAACAATGACAAACTAGA
CAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis NCTC 12261

44.554

93.519

0.417
  comGG/cglG Streptococcus mitis SK321

44.554

93.519

0.417
  comGG/cglG Streptococcus pneumoniae Rx1

43

92.593

0.398
  comGG/cglG Streptococcus pneumoniae D39

43

92.593

0.398
  comGG/cglG Streptococcus pneumoniae R6

43

92.593

0.398
  comGG/cglG Streptococcus pneumoniae TIGR4

43

92.593

0.398
  comGG Streptococcus mutans UA140

36.697

100

0.37
  comGG Streptococcus mutans UA159

36.697

100

0.37