Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABFU70_RS16185 Genome accession   NZ_CP155939
Coordinates   3688472..3689866 (+) Length   464 a.a.
NCBI ID   WP_044474924.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain CFBP 8242     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3683472..3694866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU70_RS16160 (ABFU70_16140) - 3683530..3683832 (-) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ABFU70_RS16165 (ABFU70_16145) - 3683836..3684246 (-) 411 WP_029628876.1 CopG family ribbon-helix-helix protein -
  ABFU70_RS16170 (ABFU70_16150) sucD 3684350..3685225 (-) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  ABFU70_RS16175 (ABFU70_16155) sucC 3685250..3686419 (-) 1170 WP_011038209.1 ADP-forming succinate--CoA ligase subunit beta -
  ABFU70_RS16180 (ABFU70_16160) - 3686653..3688263 (+) 1611 WP_011038210.1 PAS domain-containing sensor histidine kinase -
  ABFU70_RS16185 (ABFU70_16165) pilR 3688472..3689866 (+) 1395 WP_044474924.1 sigma-54 dependent transcriptional regulator Regulator
  ABFU70_RS16195 (ABFU70_16175) pilB 3690285..3692018 (-) 1734 WP_011038212.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABFU70_RS16200 (ABFU70_16180) - 3692083..3692484 (-) 402 WP_194734302.1 pilin -
  ABFU70_RS16205 (ABFU70_16185) pilE 3692597..3693037 (-) 441 WP_011038214.1 pilin Machinery gene
  ABFU70_RS16210 (ABFU70_16190) pilC 3693364..3694620 (+) 1257 WP_011038215.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50200.56 Da        Isoelectric Point: 6.2003

>NTDB_id=999955 ABFU70_RS16185 WP_044474924.1 3688472..3689866(+) (pilR) [Xanthomonas campestris pv. campestris strain CFBP 8242]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIASQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPLEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=999955 ABFU70_RS16185 WP_044474924.1 3688472..3689866(+) (pilR) [Xanthomonas campestris pv. campestris strain CFBP 8242]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGAGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCTC
CGCTGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTTGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCCGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAACCGGGTCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCAGTGCGCCCGGTCGGCGC
CTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACACACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGATCTGTATTACCGCATCAACGTGATCGAGCTGCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGCCTGGCCCGCAGCCATGGCCGCCCGATCCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTACCCGCCCACGGCGGCCATCGCCTTGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCGGTCGTCGACATCGATCCGGCCTCCTCTGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCCCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAATTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.261

99.138

0.627
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491

Multiple sequence alignment