Detailed information    

insolico Bioinformatically predicted

Overview


Name   comQ   Type   Regulator
Locus tag   M036_RS16230 Genome accession   NZ_CP005997
Coordinates   3100549..3101409 (-) Length   286 a.a.
NCBI ID   WP_029318489.1    Uniprot ID   -
Organism   Bacillus subtilis TO-A     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 3095549..3106409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M036_RS16195 (M036_16165) mrpE 3095787..3096263 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  M036_RS16200 (M036_16170) mrpF 3096263..3096547 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  M036_RS16205 (M036_16175) mnhG 3096531..3096905 (+) 375 WP_003228812.1 monovalent cation/H(+) antiporter subunit G -
  M036_RS16210 (M036_16180) yuxO 3096944..3097324 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  M036_RS16215 (M036_16185) comA 3097343..3097987 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  M036_RS16220 (M036_16190) - 3098068..3100365 (-) 2298 Protein_3146 histidine kinase -
  M036_RS16225 (M036_16195) comX 3100373..3100534 (-) 162 WP_003228803.1 competence pheromone ComX -
  M036_RS16230 (M036_16200) comQ 3100549..3101409 (-) 861 WP_029318489.1 polyprenyl synthetase family protein Regulator
  M036_RS16235 (M036_16205) degQ 3101594..3101734 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  M036_RS21830 - 3101956..3102081 (+) 126 WP_003228793.1 hypothetical protein -
  M036_RS16240 (M036_16210) - 3102195..3102563 (+) 369 WP_014477834.1 hypothetical protein -
  M036_RS16245 (M036_16215) pdeH 3102539..3103768 (-) 1230 WP_003228790.1 cyclic di-GMP phosphodiesterase -
  M036_RS16250 (M036_16220) pncB 3103905..3105377 (-) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -
  M036_RS16255 (M036_16225) pncA 3105393..3105944 (-) 552 WP_048217610.1 isochorismatase family cysteine hydrolase -

Sequence


Protein


Download         Length: 286 a.a.        Molecular weight: 32481.42 Da        Isoelectric Point: 4.6838

>NTDB_id=99991 M036_RS16230 WP_029318489.1 3100549..3101409(-) (comQ) [Bacillus subtilis TO-A]
MKEIVSQKIMNQDLERYLQNFIESKDTFEFADLALHHYLAFNGQDQKAIELLAAGIELLILSFDIYDDLEDQDNGSAVWM
KIDSSIALNAVTALYTLSIQVMCQASHEPEFSQEILNFALQSIQGQHDDIVNAPQTEEACLEMIKNKSGALTALPCVMGV
MLATGKYHPIVASYSYELGIIAQIENDYKGLFYLNNDFVQKKNTLAYLYLKKQFNDASAELLSLYQKPEEFVSINTKALK
RKLTEAGVIQYLLVMKHLSLQKIKNEMSQLKLEEDKTEKLLSVMIK

Nucleotide


Download         Length: 861 bp        

>NTDB_id=99991 M036_RS16230 WP_029318489.1 3100549..3101409(-) (comQ) [Bacillus subtilis TO-A]
ATGAAGGAGATTGTAAGCCAAAAAATAATGAATCAGGACTTGGAACGATATCTTCAGAATTTTATTGAGTCTAAGGATAC
GTTTGAGTTTGCCGATTTGGCTCTTCATCATTATTTAGCTTTTAACGGTCAGGACCAAAAAGCAATCGAATTGCTAGCTG
CCGGAATTGAATTGCTTATACTCTCATTCGATATTTATGATGACTTAGAGGATCAAGATAATGGAAGTGCTGTCTGGATG
AAGATTGACTCGTCAATCGCTTTAAATGCAGTTACAGCTCTTTACACCCTAAGTATACAAGTGATGTGTCAAGCTAGTCA
TGAACCAGAATTTTCACAAGAGATATTGAATTTTGCGTTACAATCAATTCAAGGCCAGCATGATGATATTGTGAATGCGC
CGCAAACTGAAGAAGCCTGTCTTGAAATGATCAAAAATAAATCAGGAGCGCTAACGGCATTGCCCTGTGTAATGGGAGTA
ATGCTGGCAACAGGCAAATACCATCCCATTGTAGCTTCTTATTCTTATGAACTTGGGATTATTGCACAAATCGAAAATGA
TTATAAAGGTTTGTTTTACTTAAATAACGATTTTGTTCAGAAAAAAAATACATTGGCATACTTATACTTAAAGAAACAAT
TTAACGATGCTTCAGCGGAGCTACTAAGTTTATATCAAAAACCAGAGGAATTTGTTTCTATTAATACTAAGGCTTTGAAG
CGAAAATTGACAGAAGCAGGCGTTATACAATATTTACTGGTGATGAAACATTTATCTCTCCAAAAAATAAAAAATGAAAT
GTCACAATTAAAACTAGAAGAAGATAAAACTGAAAAATTATTGTCTGTTATGATTAAATAA

Domains


Predicted by InterProScan.

(39-229)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

45.196

98.252

0.444


Multiple sequence alignment