Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABFU26_RS15975 Genome accession   NZ_CP155935
Coordinates   3640273..3641667 (+) Length   464 a.a.
NCBI ID   WP_043921909.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain Xcr-TH1B     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3635331..3648970 3640273..3641667 within 0


Gene organization within MGE regions


Location: 3635331..3648970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU26_RS15950 (ABFU26_15905) - 3635331..3635633 (-) 303 WP_323475834.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ABFU26_RS15955 (ABFU26_15910) - 3635637..3636047 (-) 411 WP_029217117.1 CopG family ribbon-helix-helix protein -
  ABFU26_RS15960 (ABFU26_15915) sucD 3636151..3637026 (-) 876 WP_047124757.1 succinate--CoA ligase subunit alpha -
  ABFU26_RS15965 (ABFU26_15920) sucC 3637051..3638220 (-) 1170 WP_407460381.1 ADP-forming succinate--CoA ligase subunit beta -
  ABFU26_RS15970 (ABFU26_15925) - 3638454..3640064 (+) 1611 WP_407460383.1 sensor histidine kinase -
  ABFU26_RS15975 (ABFU26_15930) pilR 3640273..3641667 (+) 1395 WP_043921909.1 sigma-54 dependent transcriptional regulator Regulator
  ABFU26_RS15980 (ABFU26_15935) - 3641865..3642221 (+) 357 WP_139328384.1 hypothetical protein -
  ABFU26_RS15985 (ABFU26_15940) - 3642166..3642957 (+) 792 WP_202796265.1 toxin -
  ABFU26_RS15990 (ABFU26_15945) pilB 3643140..3644873 (-) 1734 WP_024939398.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABFU26_RS15995 (ABFU26_15950) - 3644915..3645328 (-) 414 WP_080689434.1 pilin -
  ABFU26_RS16000 (ABFU26_15955) comP 3645425..3645856 (-) 432 WP_024939397.1 pilin Machinery gene
  ABFU26_RS16005 (ABFU26_15960) pilC 3646204..3647463 (+) 1260 WP_024939396.1 type II secretion system F family protein Machinery gene
  ABFU26_RS16010 (ABFU26_15965) - 3647470..3648333 (+) 864 WP_223646361.1 A24 family peptidase -
  ABFU26_RS16015 (ABFU26_15970) coaE 3648347..3648970 (+) 624 WP_323486787.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50279.66 Da        Isoelectric Point: 6.3588

>NTDB_id=999905 ABFU26_RS15975 WP_043921909.1 3640273..3641667(+) (pilR) [Xanthomonas campestris pv. raphani strain Xcr-TH1B]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=999905 ABFU26_RS15975 WP_043921909.1 3640273..3641667(+) (pilR) [Xanthomonas campestris pv. raphani strain Xcr-TH1B]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAACTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATTACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGTGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCCGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
GTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAACTCCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCCGTGGTCGACATCGATCCCGCCTCGGCCGCCCTGCCCTCTTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGGTGGAACAAGACCAGAACTGCCGCGCAGCTAGGCATCACGTTTCGTGCGC
TGCGCTACAAGCTCAAGAAATTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489

Multiple sequence alignment