Detailed information    

insolico Bioinformatically predicted

Overview


Name   braR   Type   Regulator
Locus tag   EL078_RS04730 Genome accession   NZ_LR134282
Coordinates   917139..917801 (-) Length   220 a.a.
NCBI ID   WP_024344090.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC8140     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 912139..922801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL078_RS04710 (NCTC8140_00947) - 912360..913049 (+) 690 WP_126438204.1 energy-coupling factor transporter transmembrane component T -
  EL078_RS04715 (NCTC8140_00948) - 913053..914435 (+) 1383 WP_126437836.1 ABC transporter ATP-binding protein -
  EL078_RS04720 (NCTC8140_00950) xerS 914953..916023 (+) 1071 WP_126437837.1 tyrosine recombinase XerS Machinery gene
  EL078_RS04725 (NCTC8140_00951) - 916198..917142 (-) 945 WP_126437838.1 sensor histidine kinase -
  EL078_RS04730 (NCTC8140_00952) braR 917139..917801 (-) 663 WP_024344090.1 DNA-binding response regulator Regulator
  EL078_RS04735 (NCTC8140_00953) - 917901..919886 (-) 1986 WP_126437839.1 FtsX-like permease family protein -
  EL078_RS04740 (NCTC8140_00954) - 919888..920640 (-) 753 WP_033152622.1 ABC transporter ATP-binding protein -
  EL078_RS04745 (NCTC8140_00957) - 921076..921897 (-) 822 WP_126437840.1 sugar phosphate isomerase/epimerase family protein -

Sequence


Protein


Download         Length: 220 a.a.        Molecular weight: 25491.27 Da        Isoelectric Point: 4.8359

>NTDB_id=999815 EL078_RS04730 WP_024344090.1 917139..917801(-) (braR) [Streptococcus equinus strain NCTC8140]
MKQGKIYIVEDDQTIVTLLKQHLAKSYDVFSVNNFRAIKQEIEEIKPDLILMDITLPYFNGFYWTTEIRKTMTLPIIFIS
SSDDEMDTVMALNMGGDDFISKPFSLTILDAKISAFLRRAYQFTSDNYQLDEFSLSRDGILSNGSEQINLSPTENKILSI
LFERQNQVVPKEELLEKLWENESFIDQNTLSVNMTRLRKKVQPIGFDRIHTVRGVGYLLK

Nucleotide


Download         Length: 663 bp        

>NTDB_id=999815 EL078_RS04730 WP_024344090.1 917139..917801(-) (braR) [Streptococcus equinus strain NCTC8140]
ATGAAACAAGGAAAAATTTATATTGTCGAAGACGATCAAACCATTGTAACTTTGCTAAAGCAGCACTTGGCTAAATCCTA
TGACGTTTTTAGTGTCAACAATTTTCGTGCTATTAAGCAAGAGATTGAAGAAATAAAACCAGATCTTATTTTGATGGATA
TTACACTGCCTTACTTTAATGGCTTTTACTGGACGACCGAAATCCGTAAGACCATGACTTTACCTATTATTTTTATCTCT
TCAAGCGATGATGAAATGGATACTGTCATGGCACTTAACATGGGAGGAGATGACTTTATCTCTAAACCATTCTCTCTAAC
TATTTTGGATGCCAAGATTTCAGCATTTTTGCGTAGAGCATACCAGTTCACTTCTGATAACTATCAACTTGATGAGTTTT
CACTGTCACGTGATGGTATTTTGTCAAATGGAAGCGAGCAAATTAATCTTTCTCCAACAGAAAATAAAATCCTAAGTATC
TTGTTTGAACGTCAAAATCAAGTCGTCCCAAAAGAAGAATTGCTAGAAAAACTGTGGGAGAACGAAAGTTTTATCGACCA
AAATACTTTGAGTGTGAATATGACACGTCTACGTAAAAAAGTACAGCCTATTGGCTTTGATCGCATACATACCGTGAGAG
GAGTAGGGTACCTTCTAAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

49.083

99.091

0.486

  vicR Streptococcus mutans UA159

34.632

100

0.364


Multiple sequence alignment