Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   EL078_RS04720 Genome accession   NZ_LR134282
Coordinates   914953..916023 (+) Length   356 a.a.
NCBI ID   WP_126437837.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC8140     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 909953..921023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL078_RS04700 (NCTC8140_00945) - 909964..911697 (+) 1734 WP_126437834.1 ABC transporter ATP-binding protein -
  EL078_RS04705 (NCTC8140_00946) - 911707..912294 (+) 588 WP_126437835.1 MptD family putative ECF transporter S component -
  EL078_RS04710 (NCTC8140_00947) - 912360..913049 (+) 690 WP_126438204.1 energy-coupling factor transporter transmembrane component T -
  EL078_RS04715 (NCTC8140_00948) - 913053..914435 (+) 1383 WP_126437836.1 ABC transporter ATP-binding protein -
  EL078_RS04720 (NCTC8140_00950) xerS 914953..916023 (+) 1071 WP_126437837.1 tyrosine recombinase XerS Machinery gene
  EL078_RS04725 (NCTC8140_00951) - 916198..917142 (-) 945 WP_126437838.1 sensor histidine kinase -
  EL078_RS04730 (NCTC8140_00952) braR 917139..917801 (-) 663 WP_024344090.1 DNA-binding response regulator Regulator
  EL078_RS04735 (NCTC8140_00953) - 917901..919886 (-) 1986 WP_126437839.1 FtsX-like permease family protein -
  EL078_RS04740 (NCTC8140_00954) - 919888..920640 (-) 753 WP_033152622.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41374.61 Da        Isoelectric Point: 9.7080

>NTDB_id=999814 EL078_RS04720 WP_126437837.1 914953..916023(+) (xerS) [Streptococcus equinus strain NCTC8140]
MKREKLLEKIDELKKIMPWYVLDYYQSKLSVPYSFTTLYEYLKEYRRFFEWILESGISNAEKIDDVELTTLEHLSKKDME
SFVLYLRERPSLNTYSTKKGVSQTTINRTLSALSSLFKYLTEEVEDENGDPYFYRNVMKKIATKKKKETLAARAENIKGK
LFLGDETMAFIEYIDKEYQNKLSHRALSSFQKNKERDLAIIALLLASGVRLSEAVNLDLKDLNLNMMVIEVTRKGGKRDS
VNVAAFAKPYLEEYLKIRAPRYKAEKQDQALFLTEYRGVPNRIDASSIEKLVAKYSQDFKVRVTPHKLRHTLATRLYGAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=999814 EL078_RS04720 WP_126437837.1 914953..916023(+) (xerS) [Streptococcus equinus strain NCTC8140]
ATGAAACGTGAAAAATTACTTGAAAAAATTGATGAATTAAAAAAAATAATGCCCTGGTATGTCCTTGACTATTACCAATC
AAAACTTTCTGTGCCATATAGTTTTACAACCTTGTACGAATACCTCAAGGAATACAGACGATTTTTTGAATGGATTCTTG
AATCAGGAATTTCAAATGCTGAAAAAATTGATGACGTTGAGTTAACAACTTTAGAGCATTTGTCTAAAAAAGATATGGAA
TCCTTCGTTCTCTATTTGCGTGAACGACCTTCGCTAAATACCTATTCAACTAAGAAAGGGGTTTCTCAGACCACTATCAA
TCGCACGTTATCAGCGCTTTCAAGCCTTTTTAAATATCTAACAGAAGAGGTTGAGGATGAAAATGGTGACCCCTACTTCT
ATCGAAATGTCATGAAAAAGATTGCAACTAAGAAGAAGAAAGAAACTTTAGCTGCTCGTGCTGAAAACATCAAAGGAAAG
CTGTTCTTGGGAGATGAGACGATGGCGTTTATCGAGTATATTGACAAAGAATATCAGAATAAGCTCTCACACCGTGCCCT
CTCCTCCTTCCAGAAAAATAAGGAGCGAGATTTAGCTATTATTGCACTTCTTCTTGCTTCTGGTGTCCGTCTTTCTGAAG
CAGTTAATCTTGATTTAAAAGATTTAAACCTCAATATGATGGTTATTGAAGTCACTCGTAAAGGTGGAAAACGAGACTCT
GTTAACGTTGCTGCTTTTGCTAAACCATATCTCGAAGAATACTTAAAAATTCGTGCACCTCGTTATAAAGCAGAAAAACA
AGATCAAGCACTATTTTTAACAGAATACCGTGGTGTTCCAAATCGTATTGATGCATCAAGTATTGAAAAATTAGTAGCTA
AATACTCACAAGACTTTAAAGTTCGAGTAACACCCCACAAGCTACGTCACACTTTGGCAACAAGATTGTATGGGGCTACT
AAATCACAAGTACTCGTCAGCCACCAATTGGGACATGCAAGTACTCAAGTTACCGACTTATATACCCATATTGTCAATGA
TGAGCAGAAAAACGCTTTGGACAAATTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834