Detailed information NTG0999778

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABFU19_RS16215
• Genome accession: NZ_CP155928
• Coordinates: 3751994..3753388 (+)
• Length: 464 a.a.
• NCBI ID: WP_042594919.1
• Uniprot ID: A0AAJ3CC33
• Organism: Xanthomonas campestris strain CFBP 13427
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3746994..3758388

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABFU19_RS16200 (ABFU19_16170)	sucD	3747874..3748749 (-)	876	WP_011038208.1	succinate--CoA ligase subunit alpha	-
ABFU19_RS16205 (ABFU19_16175)	sucC	3748774..3749943 (-)	1170	WP_011038209.1	ADP-forming succinate--CoA ligase subunit beta	-
ABFU19_RS16210 (ABFU19_16180)	-	3750177..3751787 (+)	1611	WP_115006667.1	PAS domain-containing sensor histidine kinase	-
ABFU19_RS16215 (ABFU19_16185)	pilR	3751994..3753388 (+)	1395	WP_042594919.1	sigma-54 dependent transcriptional regulator	Regulator
ABFU19_RS16220 (ABFU19_16190)	pilB	3753818..3755551 (-)	1734	WP_042594920.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABFU19_RS16225 (ABFU19_16195)	-	3755732..3756631 (+)	900	WP_080869819.1	glycosyltransferase family 2 protein	-
ABFU19_RS16230 (ABFU19_16200)	-	3756624..3757790 (+)	1167	WP_119959176.1	glycosyltransferase	-

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 50293.69 Da
• Isoelectric Point: 6.5131

>NTDB_id=999778 ABFU19_RS16215 WP_042594919.1 3751994..3753388(+) (pilR) [Xanthomonas campestris strain CFBP 13427]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1395 bp

>NTDB_id=999778 ABFU19_RS16215 WP_042594919.1 3751994..3753388(+) (pilR) [Xanthomonas campestris strain CFBP 13427]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTAGGCCGCAT
GGGGCTGCGCATCAGCACGGCCGCCAACCTGGCCGAAGCGCGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTACCCGACGGCAACGGCATCGAACTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCATTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAACACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCTC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAAGGCGC
ACGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCCGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCGGGCGAGACGCTGGTGGACGTGCGCATCCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAGCTGCGCGTGCCGCCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGCCTGGCCCGCAGCCACGGCCGCCCGATCCCATTGCTTACCCAATCCGCGCTCGA
TGCCCTGAACCAATACGGATTCCCGGGCAATGTGCGCGAACTGGAAAACATCCTCGAACGTGCGCTTGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCATGGCGGCCACCGCCTTGCCGCCAGCCCGGGCACCGCTGCG
GTTGAACCGCGCGAAGCGGTGGTCGACATCGACCCGGCCTCCTCTGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCCCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAATTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (421-461)

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.067	99.784	0.629
pilR	Acinetobacter baumannii strain A118	49.138	100	0.491