Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   EL099_RS09215 Genome accession   NZ_LR134271
Coordinates   1825092..1826081 (-) Length   329 a.a.
NCBI ID   WP_070040295.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC7988     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1820092..1831081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL099_RS09200 (NCTC7988_01737) acsA 1821293..1822999 (-) 1707 WP_000862099.1 acetate--CoA ligase -
  EL099_RS09205 (NCTC7988_01738) - 1823168..1823800 (+) 633 WP_001015993.1 hypothetical protein -
  EL099_RS09210 (NCTC7988_01739) - 1823825..1824994 (+) 1170 WP_065315680.1 acetoin utilization protein AcuC -
  EL099_RS09215 (NCTC7988_01740) ccpA 1825092..1826081 (-) 990 WP_070040295.1 catabolite control protein A Regulator
  EL099_RS09220 - 1826154..1826267 (-) 114 WP_001803513.1 hypothetical protein -
  EL099_RS09225 (NCTC7988_01741) - 1826621..1827712 (-) 1092 WP_000066380.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  EL099_RS09230 - 1828170..1828253 (-) 84 WP_031789490.1 hypothetical protein -
  EL099_RS09235 (NCTC7988_01742) - 1828409..1829773 (-) 1365 WP_065316414.1 hypothetical protein -
  EL099_RS09240 (NCTC7988_01743) - 1829847..1830338 (-) 492 WP_000383814.1 DUF948 domain-containing protein -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 35975.17 Da        Isoelectric Point: 5.7655

>NTDB_id=999511 EL099_RS09215 WP_070040295.1 1825092..1826081(-) (ccpA) [Staphylococcus aureus strain NCTC7988]
MTVTIYDVAREARVSMATVSRVVNGNQNVKAETKNKVNEVIKRLNYRPNAVARGLASKKTTTVGVIIPDISNIYYSQLAR
GLEDIATMYKYHSIISNSDNDPEKEKEIFNNLLSKQVDGIIFLGGTITEEMKELINQSSVPVVVSGTNGKDAHIASVNID
FTEAAKEITGELIEKGAKSFALVGGEHSKKAQEDVLAGLTEVLNKNGLQLGDTLNCSGAESYKEGVKAFAKMKGSLPDAI
LCISDEEAIGIMHSAMDAGIKVPEELQIISFNNTRLVEMVRPQLSSVIQPLYDIGAVGMRLLTKYMNDEKIEEPNVVLPH
RIEYRGTTK

Nucleotide


Download         Length: 990 bp        

>NTDB_id=999511 EL099_RS09215 WP_070040295.1 1825092..1826081(-) (ccpA) [Staphylococcus aureus strain NCTC7988]
ATGACAGTTACTATATATGATGTAGCAAGAGAAGCGCGTGTCTCTATGGCCACAGTGTCGCGTGTTGTTAATGGGAACCA
AAATGTTAAAGCAGAAACTAAAAATAAAGTTAACGAAGTCATTAAGCGTTTGAATTATCGTCCAAATGCTGTTGCTAGAG
GTTTAGCTAGTAAAAAGACAACAACAGTAGGTGTGATCATTCCAGATATATCTAATATCTATTATTCACAACTTGCTCGT
GGACTTGAAGATATTGCAACAATGTATAAATATCACTCAATTATTTCAAATTCAGATAACGATCCTGAAAAGGAAAAAGA
AATTTTTAATAACTTATTAAGTAAACAAGTTGATGGTATTATTTTCCTTGGTGGTACAATTACTGAAGAAATGAAAGAAT
TGATAAATCAATCATCTGTACCTGTAGTAGTATCAGGAACAAATGGTAAGGATGCACATATAGCATCTGTTAATATTGAT
TTTACTGAAGCTGCGAAAGAAATTACGGGAGAATTAATTGAAAAAGGCGCTAAATCATTTGCTTTAGTAGGTGGAGAACA
TTCTAAAAAAGCTCAAGAAGATGTTTTAGCAGGTTTAACTGAAGTGTTAAATAAAAATGGCCTTCAATTAGGTGATACAT
TGAATTGTTCTGGTGCTGAAAGTTATAAAGAAGGCGTAAAAGCTTTTGCTAAAATGAAAGGTAGTCTTCCAGATGCTATA
TTATGTATCAGTGACGAAGAAGCTATTGGTATCATGCATAGTGCAATGGATGCTGGTATTAAAGTTCCAGAGGAATTACA
AATTATTAGTTTCAATAATACACGCTTAGTTGAGATGGTTAGACCACAACTTTCTAGTGTTATTCAACCATTATATGATA
TCGGTGCAGTAGGGATGCGCTTATTAACAAAATATATGAACGATGAAAAGATAGAAGAACCAAATGTAGTTTTACCACAC
AGAATTGAATACCGAGGAACTACAAAATAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(171-328)

Bacterial regulatory proteins, lacI family (LacI)

(4-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

47.879

100

0.48
  ccpA Streptococcus gordonii str. Challis substr. CH1

47.416

100

0.474
  ccpA Streptococcus pneumoniae D39

46.505

100

0.465