Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ABD409_RS08285 Genome accession   NZ_CP155741
Coordinates   1638070..1638561 (-) Length   163 a.a.
NCBI ID   WP_002993238.1    Uniprot ID   A0A9X5LZM9
Organism   Streptococcus pyogenes strain 400/03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1633070..1643561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD409_RS08270 (ABD409_08245) - 1635803..1636747 (+) 945 WP_002983147.1 magnesium transporter CorA family protein -
  ABD409_RS08275 (ABD409_08250) - 1636879..1637535 (+) 657 WP_002983144.1 DUF1129 domain-containing protein -
  ABD409_RS08280 (ABD409_08255) rpsR 1637666..1637905 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  ABD409_RS08285 (ABD409_08260) ssbA 1638070..1638561 (-) 492 WP_002993238.1 single-stranded DNA-binding protein Machinery gene
  ABD409_RS08290 (ABD409_08265) rpsF 1638583..1638873 (-) 291 WP_002983117.1 30S ribosomal protein S6 -
  ABD409_RS08295 (ABD409_08270) - 1639046..1639339 (-) 294 WP_002983113.1 hypothetical protein -
  ABD409_RS08300 (ABD409_08275) mutY 1639507..1640661 (+) 1155 WP_002983107.1 A/G-specific adenine glycosylase -
  ABD409_RS08305 (ABD409_08280) - 1640838..1641425 (+) 588 WP_020837707.1 helix-turn-helix domain-containing protein -
  ABD409_RS08310 (ABD409_08285) trxA 1641477..1641809 (-) 333 WP_256363924.1 thioredoxin -
  ABD409_RS08315 (ABD409_08290) - 1641872..1642372 (-) 501 WP_023609923.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17995.78 Da        Isoelectric Point: 4.8894

>NTDB_id=999276 ABD409_RS08285 WP_002993238.1 1638070..1638561(-) (ssbA) [Streptococcus pyogenes strain 400/03]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=999276 ABD409_RS08285 WP_002993238.1 1638070..1638561(-) (ssbA) [Streptococcus pyogenes strain 400/03]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGCCAACCTGCTGAAAATTTAGCAAACTGGGCTAAAAAAGGTGCCTTGATCGGAATTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGGTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACACCTAACTTTGGAAGAGATGATAGCCCATTTGGCAATTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.626
  ssb Latilactobacillus sakei subsp. sakei 23K

59.302

100

0.626
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368

Multiple sequence alignment