Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ABD412_RS08710 Genome accession   NZ_CP155737
Coordinates   1733066..1733557 (-) Length   163 a.a.
NCBI ID   WP_002993238.1    Uniprot ID   A0A9X5LZM9
Organism   Streptococcus pyogenes strain 9606/11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1728066..1738557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD412_RS08680 (ABD412_08650) - 1729025..1729756 (-) 732 WP_004804163.1 phage antirepressor Ant -
  ABD412_RS08685 (ABD412_08655) - 1729753..1730238 (-) 486 WP_369303553.1 PcfB family protein -
  ABD412_RS08690 (ABD412_08660) - 1730241..1731269 (-) 1029 WP_369303554.1 DUF6017 domain-containing protein -
  ABD412_RS08695 (ABD412_08665) - 1731359..1731643 (-) 285 WP_369303555.1 CD1845 family protein -
  ABD412_RS08700 (ABD412_08670) - 1731875..1732531 (+) 657 WP_002983144.1 DUF1129 domain-containing protein -
  ABD412_RS08705 (ABD412_08675) rpsR 1732662..1732901 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  ABD412_RS08710 (ABD412_08680) ssbA 1733066..1733557 (-) 492 WP_002993238.1 single-stranded DNA-binding protein Machinery gene
  ABD412_RS08715 (ABD412_08685) rpsF 1733579..1733869 (-) 291 WP_002983117.1 30S ribosomal protein S6 -
  ABD412_RS08720 (ABD412_08690) - 1734042..1734335 (-) 294 WP_002983113.1 hypothetical protein -
  ABD412_RS08725 (ABD412_08695) mutY 1734503..1735657 (+) 1155 WP_002983107.1 A/G-specific adenine glycosylase -
  ABD412_RS08730 (ABD412_08700) - 1735834..1736421 (+) 588 WP_020837707.1 helix-turn-helix domain-containing protein -
  ABD412_RS08735 (ABD412_08705) trxA 1736473..1736805 (-) 333 WP_256363924.1 thioredoxin -
  ABD412_RS08740 (ABD412_08710) - 1736868..1737368 (-) 501 WP_023609923.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17995.78 Da        Isoelectric Point: 4.8894

>NTDB_id=999043 ABD412_RS08710 WP_002993238.1 1733066..1733557(-) (ssbA) [Streptococcus pyogenes strain 9606/11]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=999043 ABD412_RS08710 WP_002993238.1 1733066..1733557(-) (ssbA) [Streptococcus pyogenes strain 9606/11]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGCCAACCTGCTGAAAATTTAGCAAACTGGGCTAAAAAAGGTGCCTTGATCGGAATTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGGTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACACCTAACTTTGGAAGAGATGATAGCCCATTTGGCAATTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.626
  ssb Latilactobacillus sakei subsp. sakei 23K

59.302

100

0.626
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368

Multiple sequence alignment