Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   ABDZ21_RS17870 Genome accession   NZ_CP155721
Coordinates   3698829..3699569 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain 2024CK-00246     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3693829..3704569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDZ21_RS17850 (ABDZ21_17850) aroB 3694371..3695453 (-) 1083 WP_001194249.1 3-dehydroquinate synthase -
  ABDZ21_RS17855 (ABDZ21_17855) aroK 3695482..3696051 (-) 570 WP_000643712.1 shikimate kinase AroK -
  ABDZ21_RS17860 (ABDZ21_17860) pilQ 3696063..3698228 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  ABDZ21_RS17865 (ABDZ21_17865) pilP 3698291..3698818 (-) 528 WP_000695069.1 pilus assembly protein PilP Machinery gene
  ABDZ21_RS17870 (ABDZ21_17870) pilO 3698829..3699569 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABDZ21_RS17875 (ABDZ21_17875) pilN 3699566..3700207 (-) 642 WP_000201225.1 PilN domain-containing protein Machinery gene
  ABDZ21_RS17880 (ABDZ21_17880) pilM 3700207..3701265 (-) 1059 WP_031950501.1 pilus assembly protein PilM Machinery gene
  ABDZ21_RS17885 (ABDZ21_17885) ponA 3701427..3703982 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=998727 ABDZ21_RS17870 WP_000076101.1 3698829..3699569(-) (pilO) [Acinetobacter baumannii strain 2024CK-00246]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=998727 ABDZ21_RS17870 WP_000076101.1 3698829..3699569(-) (pilO) [Acinetobacter baumannii strain 2024CK-00246]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTATGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTGCCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTAGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment